Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0549 ATGAATTTCAAAATGCTCAAAGCCTTTATCTCATTCATTTTTATTTTCGCCGCCGTGGCCTCCTCCACCCAAATTCACAGAAAGGCTTATGTTGTGTATATGGGAGCATTGCCAAAACTGCAGAGCCATGAGCTTCTTTCAGATCATCATCACAGCCTTTTGGCTAATGCAGTTGGAAATGAGGAATTGGCGAAAAAAACCAAGATTTATAGCTATGGAAGGAGCTTCAATGGATTTGCTGCAAGGCTATTGCCCCATGAAGCAAAGAAACTAGCAAAGGAAAAAAGAGTGGTGTCAGTATTTCGGAGCAAGATGAGGAAATTGCAAACGACAAGATCGTGGGATTATTTGGGGCTGTCGGAGGCGGCGAGCCGCCGTAACGCCGCCGCAGAATCTAACGTCATTGTCGGAGTTTTCAACGACCATGGCTACGGCCCAATTCCTTCTAGGTGGAAGGGTGAATGTGTAATTGCCCATAACTTCACCGGCTGTAACAGGAAAGTGATCGGCGCTCGGTACTTCAACCTGGAAAATGCAGACGACACAGTAAACCAAAGCCCTGTGGACGAGTTAGGCCACGGCTCCCACTGTGCCTCCACTGTGGCCGGCACCGCCGTGAGAGGCGCCAGCTTCTATGGCGTAGCAAAAGGTACCGCACGCGGCGGCGTCCCCGCAGCGAGAATTGCAATGTACAAAGTGTGCTGGAGTGTAGGCTGCACGGACACGGACCTGCTGGCAGGATTCGACCACGCAATCGCTGACGGAGTCGACATATTGTCGGTGTCTGTCGGAGGCGCTGCGCCAGTGTTCTTCGAGGACCCGATTGCAATCGGGTCGTTTCACGCGATGGAGAAAGGGATATTGACGAGTTGCGCCGCCGGGAATGACGGGCCGGAGGTGAAGACGGTGGAGAATGTGGCGCCGTGGATAATGACGGTGGCGGCTTCTACCGTTGATAGAGATTTCAGTACCCTTCTTGTGTTGGGTAATAATAACAAAGTTGCTGGAGAATCAATAAATACATTTTCACCAAAGAAGAAGATGTACCCTCTCATCACTGGAACACAGGCAGCACTATCCCAAGACGATCCAGGGGCTAAGTGGTGTGATGATGGGACTCTTGACAAGAAAAAGGTGTTAGGGAAAATTGTGTATTGTTTGGGAGCTTATTCTCAAGAGCCCATAATCTCTGGGCTTGGTGGTGTTGGAGTTATTGTAAATCTCCTGAATTCTCCTGAAACTGCTATCACCACTCCCATTCCGTCCACACATATTTCCTATCAAGATTCTAGTGTTATTGAAGCCTACCTCAACTCCACCAAGAATCCTCAAGCAGTGATAATGAAAACAACCACAAAGAAAACAAAGGCTCCTTTTTTGGCATACTTTTCTTCAAGAGGTCCTCAGGGCGTAGCTCGTGATATCCTCAAGCCTGATATTACAGCACCGGGGGAGAACATATTAGCGGCATTCACGAAACTGGCAACAATTCCAAAAGACAGACATTCAGTTTTTAGCATTATGTCTGGAACTTCAATGGCATGTCCTCACGGCGCCTCCGCGGCTGCCTTTCTCAAAACTTTCCACCCGACTTGGTCACCTGCCGCCATCAAGTCCGCCCTCATGACCACCGCAACACCATTAAAGATCGAAGAAGAAGGAGAGGAGCTCGGCGCCGGTGCTGGCCAAATAAACCCGATGAAGGCCATACATCCCGGCCTCGTTTTCGACCTCACTCCCAAATCATACCTCTCATTCCTTTGCTCCAAACTTAACTACTCGGGCACCGCCCTGGCCATCCTCGCCGGTGACACGTCCTTCAACTGCTCCGCCAACCCGCCGCCCGCCGGCTCCGACGGCCTCAACTACCCCACCATGTACGCCCCGGTTAACTGGGACGCCACCAACGTCTCTGCCGTGTTCCACCGCATCGTGACCCACGTCGGTTTCGGGCCGTCAACTTATAAGGCAAAGATCAAGTCGCCGCGGGGTCTGAGGGTGAACGTGTGGCCGCATACTTTGGTGTTCGGCCGGGCGTATGAGAAACGGTCGTTTAAGGTTACGGTGAAAGGGGCGGTGTCCGAGGAGGAGGACGTTGTTTTGAAGGCTGAGCTTGTGTGGGATGATTCTAAGCATTATGTTAGGATCCCTATCTTGGTTTCTAGAGTTTAG 2172 51.01 MNFKMLKAFISFIFIFAAVASSTQIHRKAYVVYMGALPKLQSHELLSDHHHSLLANAVGNEELAKKTKIYSYGRSFNGFAARLLPHEAKKLAKEKRVVSVFRSKMRKLQTTRSWDYLGLSEAASRRNAAAESNVIVGVFNDHGYGPIPSRWKGECVIAHNFTGCNRKVIGARYFNLENADDTVNQSPVDELGHGSHCASTVAGTAVRGASFYGVAKGTARGGVPAARIAMYKVCWSVGCTDTDLLAGFDHAIADGVDILSVSVGGAAPVFFEDPIAIGSFHAMEKGILTSCAAGNDGPEVKTVENVAPWIMTVAASTVDRDFSTLLVLGNNNKVAGESINTFSPKKKMYPLITGTQAALSQDDPGAKWCDDGTLDKKKVLGKIVYCLGAYSQEPIISGLGGVGVIVNLLNSPETAITTPIPSTHISYQDSSVIEAYLNSTKNPQAVIMKTTTKKTKAPFLAYFSSRGPQGVARDILKPDITAPGENILAAFTKLATIPKDRHSVFSIMSGTSMACPHGASAAAFLKTFHPTWSPAAIKSALMTTATPLKIEEEGEELGAGAGQINPMKAIHPGLVFDLTPKSYLSFLCSKLNYSGTALAILAGDTSFNCSANPPPAGSDGLNYPTMYAPVNWDATNVSAVFHRIVTHVGFGPSTYKAKIKSPRGLRVNVWPHTLVFGRAYEKRSFKVTVKGAVSEEEDVVLKAELVWDDSKHYVRIPILVSRV 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43058682 43066110 + Sed0004179.1 Sed02g0549 704217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0549 723 Pfam Subtilase family 171 560 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed02g0549 723 ProSitePatterns Serine proteases, subtilase family, histidine active site. 193 203 IPR022398 -
Sed02g0549 723 CDD Peptidases_S8_3 107 546 IPR034197 -
Sed02g0549 723 CDD PA_subtilisin_like 326 447 - -
Sed02g0549 723 Gene3D - 587 723 - -
Sed02g0549 723 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 16 109 IPR037045 -
Sed02g0549 723 ProSiteProfiles Serine proteases, subtilase domain profile. 113 570 - -
Sed02g0549 723 Pfam Peptidase inhibitor I9 30 109 IPR010259 -
Sed02g0549 723 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 718 IPR045051 -
Sed02g0549 723 Gene3D Peptidase S8/S53 domain 138 583 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed02g0549 723 SUPERFAMILY Subtilisin-like 108 574 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed02g0549 723 PRINTS Subtilisin serine protease family (S8) signature 189 202 IPR015500 -
Sed02g0549 723 PRINTS Subtilisin serine protease family (S8) signature 509 525 IPR015500 -
Sed02g0549 723 Pfam Fibronectin type-III domain 621 720 IPR041469 -
Sed02g0549 723 FunFam Subtilisin-like protease SBT5.3 18 109 - -
Sed02g0549 723 Gene3D - 319 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0549 Sed-Chr2:43058682 Sed06g0199 Sed-Chr6:1500298 1.20E-171 dispersed
Sed10g1120 Sed-Chr10:12871406 Sed02g0549 Sed-Chr2:43058682 2.80E-216 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0549 - - - 0.0