Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0553 | ATGGACTTTCATCTGAAGCAATGTAGAAACCAGGAGGAGTCAGAACAACAACATTCTGCAAAGACATCAAAGTTTTTTCATCAGCAACAACAACAACAACAACCAGAATCCTCTGTTTCTTCTGTTCTTCCATTGTTTGTCCCTCATTCCATCAACCCCAAAACTTCAACTATCTTGTCAGCATTTCCTGATTCAACTTCTTCTTCTTCTAATACATTACCAAGGATGTGGGGTTATTTCAGTGTGGCTCAAAGGCAGGAACTTGAGCTTCAAGCTCACATTTTCCGGTACATGTTGGCCGGCGCCGCCGTCCCACCGGAGCTTCTCCGCCCTATCAAGAACAGTCTTCTCTCCTCTGCTTCTCCATTGTTTCTTCAACATTTCCCTCAATATCCCACTTCTTTGTTGCAATCTGGTTATTGGGGCAGAGCCGCCATGGATCCGGAGCCTGGCCGGTGCCGGAGAACCGACGGCAAAAAATGGCGTTGTTCAAGAGATGTGGTCGCCGGCCAGAAATACTGCGAGCGCCACATGCACCGTGGCCGGAATCGTTCAAGAAAGCCTGTGGAAACCGCCACAACCGCCACCGGAGCTAGAGGCGGCGGCGGCGGTGGTCGGCCTTTTCTGACTGTGGAAAGTGGGAATCTTTTTTCTCTATCTGGACAAACCCCATCCGTCGATCTTCTCCATCTTAATCAACGTTCTTACACTGATTCGTTATCGGAGAATAAAAATATCTATGAGTCACACAAAGAAGGCTCGACTGGAGATGCCAAATCTGATGGCCATTTGTTGAGGCATTTCTTCGACGATTGGCCGAGGTCCAACAACGGCGAGCGCAGCAACAATGTCACTGCTTCCACTACATCGCTTTCGATTTCGATGTCTGAGAACATGTCGTCGTCCTCTGACGTGTTGTTGAAATTGTCTACAGGAGGAAGTTCTGATCAAGACAGTGGTCAAGAGCATGTGCAGTTGAATTGGGCTGCTGGCTGGGGTGCCACACAGATGGCGTCGATGGGCGGACCGTTGGCCGAGGCACTGCGCTCGGCGAATAACAACTCGCCGACGAGTGTGCTGCGCCATCAGTTGCAAAAGGCAACCAACTCGGAAGCTAGCTTCATCAGCACTTGA | 1134 | 49.91 | MDFHLKQCRNQEESEQQHSAKTSKFFHQQQQQQQPESSVSSVLPLFVPHSINPKTSTILSAFPDSTSSSSNTLPRMWGYFSVAQRQELELQAHIFRYMLAGAAVPPELLRPIKNSLLSSASPLFLQHFPQYPTSLLQSGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVETATTATGARGGGGGGRPFLTVESGNLFSLSGQTPSVDLLHLNQRSYTDSLSENKNIYESHKEGSTGDAKSDGHLLRHFFDDWPRSNNGERSNNVTASTTSLSISMSENMSSSSDVLLKLSTGGSSDQDSGQEHVQLNWAAGWGATQMASMGGPLAEALRSANNNSPTSVLRHQLQKATNSEASFIST | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 43115887 | 43118472 | - | Sed0002035.1 | Sed02g0553 | 704221 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0553 | 377 | PANTHER | GROWTH-REGULATING FACTOR 5 | 33 | 300 | IPR031137 | GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro) | |
Sed02g0553 | 377 | Pfam | QLQ | 80 | 112 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed02g0553 | 377 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Sed02g0553 | 377 | Pfam | WRC | 148 | 190 | IPR014977 | - | |
Sed02g0553 | 377 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Sed02g0553 | 377 | MobiDBLite | consensus disorder prediction | 180 | 206 | - | - | |
Sed02g0553 | 377 | ProSiteProfiles | WRC domain profile. | 147 | 191 | IPR014977 | - | |
Sed02g0553 | 377 | SMART | QLQ_2 | 78 | 114 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed02g0553 | 377 | MobiDBLite | consensus disorder prediction | 21 | 38 | - | - | |
Sed02g0553 | 377 | ProSiteProfiles | QLQ domain profile. | 79 | 114 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0553 | Sed-Chr2:43115887 | Sed06g0051 | Sed-Chr6:308788 | 9.90E-29 | dispersed | |
Sed02g0553 | Sed-Chr2:43115887 | Sed04g1460 | Sed-Chr4:29269896 | 2.20E-113 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37525 | PF08879 | WRC | 2.30E-22 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0553 | - | - | - | 0.0 |