Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0553 ATGGACTTTCATCTGAAGCAATGTAGAAACCAGGAGGAGTCAGAACAACAACATTCTGCAAAGACATCAAAGTTTTTTCATCAGCAACAACAACAACAACAACCAGAATCCTCTGTTTCTTCTGTTCTTCCATTGTTTGTCCCTCATTCCATCAACCCCAAAACTTCAACTATCTTGTCAGCATTTCCTGATTCAACTTCTTCTTCTTCTAATACATTACCAAGGATGTGGGGTTATTTCAGTGTGGCTCAAAGGCAGGAACTTGAGCTTCAAGCTCACATTTTCCGGTACATGTTGGCCGGCGCCGCCGTCCCACCGGAGCTTCTCCGCCCTATCAAGAACAGTCTTCTCTCCTCTGCTTCTCCATTGTTTCTTCAACATTTCCCTCAATATCCCACTTCTTTGTTGCAATCTGGTTATTGGGGCAGAGCCGCCATGGATCCGGAGCCTGGCCGGTGCCGGAGAACCGACGGCAAAAAATGGCGTTGTTCAAGAGATGTGGTCGCCGGCCAGAAATACTGCGAGCGCCACATGCACCGTGGCCGGAATCGTTCAAGAAAGCCTGTGGAAACCGCCACAACCGCCACCGGAGCTAGAGGCGGCGGCGGCGGTGGTCGGCCTTTTCTGACTGTGGAAAGTGGGAATCTTTTTTCTCTATCTGGACAAACCCCATCCGTCGATCTTCTCCATCTTAATCAACGTTCTTACACTGATTCGTTATCGGAGAATAAAAATATCTATGAGTCACACAAAGAAGGCTCGACTGGAGATGCCAAATCTGATGGCCATTTGTTGAGGCATTTCTTCGACGATTGGCCGAGGTCCAACAACGGCGAGCGCAGCAACAATGTCACTGCTTCCACTACATCGCTTTCGATTTCGATGTCTGAGAACATGTCGTCGTCCTCTGACGTGTTGTTGAAATTGTCTACAGGAGGAAGTTCTGATCAAGACAGTGGTCAAGAGCATGTGCAGTTGAATTGGGCTGCTGGCTGGGGTGCCACACAGATGGCGTCGATGGGCGGACCGTTGGCCGAGGCACTGCGCTCGGCGAATAACAACTCGCCGACGAGTGTGCTGCGCCATCAGTTGCAAAAGGCAACCAACTCGGAAGCTAGCTTCATCAGCACTTGA 1134 49.91 MDFHLKQCRNQEESEQQHSAKTSKFFHQQQQQQQPESSVSSVLPLFVPHSINPKTSTILSAFPDSTSSSSNTLPRMWGYFSVAQRQELELQAHIFRYMLAGAAVPPELLRPIKNSLLSSASPLFLQHFPQYPTSLLQSGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVETATTATGARGGGGGGRPFLTVESGNLFSLSGQTPSVDLLHLNQRSYTDSLSENKNIYESHKEGSTGDAKSDGHLLRHFFDDWPRSNNGERSNNVTASTTSLSISMSENMSSSSDVLLKLSTGGSSDQDSGQEHVQLNWAAGWGATQMASMGGPLAEALRSANNNSPTSVLRHQLQKATNSEASFIST 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43115887 43118472 - Sed0002035.1 Sed02g0553 704221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0553 377 PANTHER GROWTH-REGULATING FACTOR 5 33 300 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Sed02g0553 377 Pfam QLQ 80 112 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed02g0553 377 MobiDBLite consensus disorder prediction 1 20 - -
Sed02g0553 377 Pfam WRC 148 190 IPR014977 -
Sed02g0553 377 MobiDBLite consensus disorder prediction 1 38 - -
Sed02g0553 377 MobiDBLite consensus disorder prediction 180 206 - -
Sed02g0553 377 ProSiteProfiles WRC domain profile. 147 191 IPR014977 -
Sed02g0553 377 SMART QLQ_2 78 114 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed02g0553 377 MobiDBLite consensus disorder prediction 21 38 - -
Sed02g0553 377 ProSiteProfiles QLQ domain profile. 79 114 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0553 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0553 Sed-Chr2:43115887 Sed06g0051 Sed-Chr6:308788 9.90E-29 dispersed
Sed02g0553 Sed-Chr2:43115887 Sed04g1460 Sed-Chr4:29269896 2.20E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1025 . . . . Bpe04g01542 . . . Cmo06g00458 Cmo14g00280 . . . . . . Cpe08g01033 . . . . . . . . . . . . . . . . Cone13ag1203 Cone19ag1189 . . . Cme04g02423 . Blo09g00512 Bda03g01681 . . . . . Sed02g0553 . . Cma06g00457 Cma14g00291 Car06g00398 Car14g00261 Cpe03g00250 . Bhi11g01964 Tan08g1759 Cmetu04g0675 Lac10g2895 . . . Cla10g01826 Cam10g1886 Cec10g1941 Cco10g1912 Clacu10g1901 Cmu10g2647 Cre10g2036 Lsi03g01923 Csa03g03391 Chy04g01955 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed02g0553 . 46 368 GRF Transcription Factor Family AT3G52910 52.7 2.1e-58 224.2
Sed06g0051 . 11 110 GRF Transcription Factor Family AT3G13960 80.0 7.0e-49 192.6
Sed06g2262 . 2 110 GRF Transcription Factor Family AT3G13960 74.3 4.5e-48 189.9
Sed03g1822 . 2 111 GRF Transcription Factor Family AT3G13960 69.6 4.8e-42 169.9
Sed08g0909 . 8 110 GRF Transcription Factor Family AT3G13960 72.8 1.8e-41 167.9
Sed12g1716 . 3 105 GRF Transcription Factor Family AT3G13960 69.9 6.5e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005938 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37525 PF08879 WRC 2.30E-22 No_clan Sed TF