Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0553 ATGGACTTTCATCTGAAGCAATGTAGAAACCAGGAGGAGTCAGAACAACAACATTCTGCAAAGACATCAAAGTTTTTTCATCAGCAACAACAACAACAACAACCAGAATCCTCTGTTTCTTCTGTTCTTCCATTGTTTGTCCCTCATTCCATCAACCCCAAAACTTCAACTATCTTGTCAGCATTTCCTGATTCAACTTCTTCTTCTTCTAATACATTACCAAGGATGTGGGGTTATTTCAGTGTGGCTCAAAGGCAGGAACTTGAGCTTCAAGCTCACATTTTCCGGTACATGTTGGCCGGCGCCGCCGTCCCACCGGAGCTTCTCCGCCCTATCAAGAACAGTCTTCTCTCCTCTGCTTCTCCATTGTTTCTTCAACATTTCCCTCAATATCCCACTTCTTTGTTGCAATCTGGTTATTGGGGCAGAGCCGCCATGGATCCGGAGCCTGGCCGGTGCCGGAGAACCGACGGCAAAAAATGGCGTTGTTCAAGAGATGTGGTCGCCGGCCAGAAATACTGCGAGCGCCACATGCACCGTGGCCGGAATCGTTCAAGAAAGCCTGTGGAAACCGCCACAACCGCCACCGGAGCTAGAGGCGGCGGCGGCGGTGGTCGGCCTTTTCTGACTGTGGAAAGTGGGAATCTTTTTTCTCTATCTGGACAAACCCCATCCGTCGATCTTCTCCATCTTAATCAACGTTCTTACACTGATTCGTTATCGGAGAATAAAAATATCTATGAGTCACACAAAGAAGGCTCGACTGGAGATGCCAAATCTGATGGCCATTTGTTGAGGCATTTCTTCGACGATTGGCCGAGGTCCAACAACGGCGAGCGCAGCAACAATGTCACTGCTTCCACTACATCGCTTTCGATTTCGATGTCTGAGAACATGTCGTCGTCCTCTGACGTGTTGTTGAAATTGTCTACAGGAGGAAGTTCTGATCAAGACAGTGGTCAAGAGCATGTGCAGTTGAATTGGGCTGCTGGCTGGGGTGCCACACAGATGGCGTCGATGGGCGGACCGTTGGCCGAGGCACTGCGCTCGGCGAATAACAACTCGCCGACGAGTGTGCTGCGCCATCAGTTGCAAAAGGCAACCAACTCGGAAGCTAGCTTCATCAGCACTTGA 1134 49.91 MDFHLKQCRNQEESEQQHSAKTSKFFHQQQQQQQPESSVSSVLPLFVPHSINPKTSTILSAFPDSTSSSSNTLPRMWGYFSVAQRQELELQAHIFRYMLAGAAVPPELLRPIKNSLLSSASPLFLQHFPQYPTSLLQSGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVETATTATGARGGGGGGRPFLTVESGNLFSLSGQTPSVDLLHLNQRSYTDSLSENKNIYESHKEGSTGDAKSDGHLLRHFFDDWPRSNNGERSNNVTASTTSLSISMSENMSSSSDVLLKLSTGGSSDQDSGQEHVQLNWAAGWGATQMASMGGPLAEALRSANNNSPTSVLRHQLQKATNSEASFIST 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43115887 43118472 - Sed0002035.1 Sed02g0553 704221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0553 377 PANTHER GROWTH-REGULATING FACTOR 5 33 300 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Sed02g0553 377 Pfam QLQ 80 112 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed02g0553 377 MobiDBLite consensus disorder prediction 1 20 - -
Sed02g0553 377 Pfam WRC 148 190 IPR014977 -
Sed02g0553 377 MobiDBLite consensus disorder prediction 1 38 - -
Sed02g0553 377 MobiDBLite consensus disorder prediction 180 206 - -
Sed02g0553 377 ProSiteProfiles WRC domain profile. 147 191 IPR014977 -
Sed02g0553 377 SMART QLQ_2 78 114 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed02g0553 377 MobiDBLite consensus disorder prediction 21 38 - -
Sed02g0553 377 ProSiteProfiles QLQ domain profile. 79 114 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0553 Sed-Chr2:43115887 Sed06g0051 Sed-Chr6:308788 9.90E-29 dispersed
Sed02g0553 Sed-Chr2:43115887 Sed04g1460 Sed-Chr4:29269896 2.20E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37525 PF08879 WRC 2.30E-22 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0553 - - - 0.0