Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0556 ATGGCTTCTTCCGCCGTCTACCGAGGCGTCCGCCGCCGCAGCACCGGCAAATGGGTCTCCGAGATTCGCGAGCCCCGAAAGCCCAACCGTATTTGGTTAGGAACCTTCCCGACCGCTGAAATGGCCGCCGTGGCTTACGACGTTGCTGCCCTTGCCCTCAAGGGCCAGGATGCCCAGCTCAATTTTCCCAATTTGGCTTCTTCACTTCCCGTTCCCGCTTCTCGGTCTCCCTCCGATATTCAAGCCGTTGCCGCCTCGGCTGCTGCTGCGCTTGGAGCAGCTGCAGCGGCAATGGAGGCACGGGGTGGAGCCAGTGCGAGCGACGGGTATCGGGAAAGATCATATGATCAAGGAGAGGTCGCGAATCATTTTGTGGACGAGGATTTGATCTTTGATATGCCTAATGTTCTTGTGAATATGGCGGAAGGGATGCTTCTTAGCCCTCCTCGTTTCAACGGCCACGGCGGAGATGATAGTCGAGACGATTACGGCGATCAAAACCTTTGGAATTTTTACTGA 519 56.26 MASSAVYRGVRRRSTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAQLNFPNLASSLPVPASRSPSDIQAVAASAAAALGAAAAAMEARGGASASDGYRERSYDQGEVANHFVDEDLIFDMPNVLVNMAEGMLLSPPRFNGHGGDDSRDDYGDQNLWNFY 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43184175 43184737 - Sed0015084.1 Sed02g0556 704224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0556 172 CDD AP2 7 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0556 172 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Sed02g0556 172 Gene3D AP2/ERF domain 6 64 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0556 172 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0556 172 Pfam AP2 domain 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0556 172 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0556 172 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0556 172 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Sed02g0556 172 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 171 IPR045277 GO:0003700(InterPro)
Sed02g0556 172 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3918 Sed-Chr1:68377726 Sed02g0556 Sed-Chr2:43184175 1.80E-34 dispersed
Sed02g0556 Sed-Chr2:43184175 Sed05g0834 Sed-Chr5:6581566 7.20E-35 dispersed
Sed10g1110 Sed-Chr10:12217342 Sed02g0556 Sed-Chr2:43184175 9.50E-44 wgd
Sed02g0556 Sed-Chr2:43184175 Sed04g1457 Sed-Chr4:29207524 3.00E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37526 PF00847 AP2 2.20E-12 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0556 - - - 0.0