Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0557 | ATGGATATGGAGGATGATGACTATCCCCATCTCTCCGATCTCCGGCACCTCCTTAGCACCGCCTCCATTCCCCACCATGATCTCTTCTCCGCCTCCGCTTCGCTGCCCTTTCGACACCATCCTACCCCTTTCGACCTCGTTCCCATCATGCCCCCTCGAGACCCACACTTTGTCTCCACTCCCCCTCCTACCGCCTTCGACCTTGACACCACCCCCGACCCCGCCGCTGCCCGATGGCCTCGCCACGAAACCCTCACTCTCTTGGATATCAGATCTCGCCTTCATTCTAAGTTCAAGCAAGCTAACCAAAAAGGCCCCCTTTGGGATGACGTTTCTAGAATCATGGCTGAGGAACACAATTATCAAAGAAGTGGGAAAAAATGCAGAGAAAAGTTTGAAAATTTATATAAATATTACAAAAAGACAAAGGAGGGCAAAGCTGGAAGACAAGATGGGAAGAACTACAGATTTTTCAGGCAGCTGGAAGCTCTCTACGGGGAAACCAGCAATGCCACGTCACTTCAAGATTCCCATTTTGTTGGAGACAGCAACCTCAGATCCCAACAAAATGGATCCAACGATCCTCCGACGAGCCACGACGCTCTGCTGAAGCATTACTGCGACAGCCTCAGCCTCTCGAACGCGTCGGACTTCGAAACCTCGGCCTCGTCTGATAGCAACGATGACCTAGGCTCGGTTGGTGTAATGGAAAACGATTCAACGGAGAAGAGGAGGAAGAGACGAGGCGGTAAATGCTGGAAGGCGCAGATCAAGATGTTCATCGACTCGGAAATGAAGAAGCTAATCGATAAGCAAGAGACTTGGTTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAAAAGGAAAGAGTGGTTCGCGAGGAAGAATGGAGGAGACAAGAAGTGTCAAGAATAGACAGGGAGAGAAACTTTTGGGCAAAGGAGAGAGCATGGATAGAAGCTAGAGATGCCGCATTAATGGAGGCATTACAAAAGCTAACAGGATCACGAGAATCGAGGGAATTCAACTCCTCGCCCAACCATGGAACGATAATGACCGAGCGTCGTCGAAATAACAGCGAGAACCAAAATGAAGACGAGAGCGAGATACTAAACATCAGCACAGCTAGAGAACTAGTAAGCAGCAACAATTACCAAAGAAAATTAATGGATCAAGGCAACAAGAAACGCAAGGAGAATTCAAGACCAGCCACCACTCCCACAACAACCTACAATCTCTACTTCCAAAATGATTCCTCCCTTTACGGCGGCAGCGGGGCCTACGGTGGTGGCACCGAGATGAAAGAACAAAGCCCGAACAGCTCAAATGCGGGCGGCGGCGGCGGCCAGGCAGTGCAAGATAGCTGCTTTCGCTTCTTGATCGGTGAAGGAGATCAGTCTCAATCAGGTTTGTGGGAAAATTTTGGGCTCAAACTCAACAATGGAAGTGATCAAACTTGA | 1461 | 49.28 | MDMEDDDYPHLSDLRHLLSTASIPHHDLFSASASLPFRHHPTPFDLVPIMPPRDPHFVSTPPPTAFDLDTTPDPAAARWPRHETLTLLDIRSRLHSKFKQANQKGPLWDDVSRIMAEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETSNATSLQDSHFVGDSNLRSQQNGSNDPPTSHDALLKHYCDSLSLSNASDFETSASSDSNDDLGSVGVMENDSTEKRRKRRGGKCWKAQIKMFIDSEMKKLIDKQETWLEKLMKTLEQKEKERVVREEEWRRQEVSRIDRERNFWAKERAWIEARDAALMEALQKLTGSRESREFNSSPNHGTIMTERRRNNSENQNEDESEILNISTARELVSSNNYQRKLMDQGNKKRKENSRPATTPTTTYNLYFQNDSSLYGGSGAYGGGTEMKEQSPNSSNAGGGGGQAVQDSCFRFLIGEGDQSQSGLWENFGLKLNNGSDQT | 486 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 43214335 | 43217395 | + | Sed0000339.1 | Sed02g0557 | 704225 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0557 | 486 | MobiDBLite | consensus disorder prediction | 335 | 370 | - | - | |
Sed02g0557 | 486 | MobiDBLite | consensus disorder prediction | 218 | 248 | - | - | |
Sed02g0557 | 486 | MobiDBLite | consensus disorder prediction | 176 | 197 | - | - | |
Sed02g0557 | 486 | MobiDBLite | consensus disorder prediction | 403 | 423 | - | - | |
Sed02g0557 | 486 | MobiDBLite | consensus disorder prediction | 434 | 449 | - | - | |
Sed02g0557 | 486 | Gene3D | - | 79 | 141 | - | - | |
Sed02g0557 | 486 | Coils | Coil | 269 | 296 | - | - | |
Sed02g0557 | 486 | Pfam | Myb/SANT-like DNA-binding domain | 78 | 164 | IPR044822 | - | |
Sed02g0557 | 486 | MobiDBLite | consensus disorder prediction | 336 | 353 | - | - | |
Sed02g0557 | 486 | MobiDBLite | consensus disorder prediction | 218 | 234 | - | - | |
Sed02g0557 | 486 | CDD | GT1 | 78 | 143 | - | - | |
Sed02g0557 | 486 | PANTHER | FI21293P1 | 73 | 405 | - | - | |
Sed02g0557 | 486 | FunFam | trihelix transcription factor PTL-like | 79 | 141 | - | - | |
Sed02g0557 | 486 | MobiDBLite | consensus disorder prediction | 176 | 200 | - | - | |
Sed02g0557 | 486 | ProSiteProfiles | Myb-like domain profile. | 71 | 136 | IPR001005 | - | |
Sed02g0557 | 486 | MobiDBLite | consensus disorder prediction | 382 | 450 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0557 | Sed-Chr2:43214335 | Sed04g1456 | Sed-Chr4:29164440 | 2.70E-127 | dispersed | |
Sed02g0557 | Sed-Chr2:43214335 | Sed04g1455 | Sed-Chr4:29164440 | 1.70E-166 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37527 | PF13837 | Myb_DNA-bind_4 | 8.50E-19 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0557 | - | - | - | 0.0 |