Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0557 ATGGATATGGAGGATGATGACTATCCCCATCTCTCCGATCTCCGGCACCTCCTTAGCACCGCCTCCATTCCCCACCATGATCTCTTCTCCGCCTCCGCTTCGCTGCCCTTTCGACACCATCCTACCCCTTTCGACCTCGTTCCCATCATGCCCCCTCGAGACCCACACTTTGTCTCCACTCCCCCTCCTACCGCCTTCGACCTTGACACCACCCCCGACCCCGCCGCTGCCCGATGGCCTCGCCACGAAACCCTCACTCTCTTGGATATCAGATCTCGCCTTCATTCTAAGTTCAAGCAAGCTAACCAAAAAGGCCCCCTTTGGGATGACGTTTCTAGAATCATGGCTGAGGAACACAATTATCAAAGAAGTGGGAAAAAATGCAGAGAAAAGTTTGAAAATTTATATAAATATTACAAAAAGACAAAGGAGGGCAAAGCTGGAAGACAAGATGGGAAGAACTACAGATTTTTCAGGCAGCTGGAAGCTCTCTACGGGGAAACCAGCAATGCCACGTCACTTCAAGATTCCCATTTTGTTGGAGACAGCAACCTCAGATCCCAACAAAATGGATCCAACGATCCTCCGACGAGCCACGACGCTCTGCTGAAGCATTACTGCGACAGCCTCAGCCTCTCGAACGCGTCGGACTTCGAAACCTCGGCCTCGTCTGATAGCAACGATGACCTAGGCTCGGTTGGTGTAATGGAAAACGATTCAACGGAGAAGAGGAGGAAGAGACGAGGCGGTAAATGCTGGAAGGCGCAGATCAAGATGTTCATCGACTCGGAAATGAAGAAGCTAATCGATAAGCAAGAGACTTGGTTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAAAAGGAAAGAGTGGTTCGCGAGGAAGAATGGAGGAGACAAGAAGTGTCAAGAATAGACAGGGAGAGAAACTTTTGGGCAAAGGAGAGAGCATGGATAGAAGCTAGAGATGCCGCATTAATGGAGGCATTACAAAAGCTAACAGGATCACGAGAATCGAGGGAATTCAACTCCTCGCCCAACCATGGAACGATAATGACCGAGCGTCGTCGAAATAACAGCGAGAACCAAAATGAAGACGAGAGCGAGATACTAAACATCAGCACAGCTAGAGAACTAGTAAGCAGCAACAATTACCAAAGAAAATTAATGGATCAAGGCAACAAGAAACGCAAGGAGAATTCAAGACCAGCCACCACTCCCACAACAACCTACAATCTCTACTTCCAAAATGATTCCTCCCTTTACGGCGGCAGCGGGGCCTACGGTGGTGGCACCGAGATGAAAGAACAAAGCCCGAACAGCTCAAATGCGGGCGGCGGCGGCGGCCAGGCAGTGCAAGATAGCTGCTTTCGCTTCTTGATCGGTGAAGGAGATCAGTCTCAATCAGGTTTGTGGGAAAATTTTGGGCTCAAACTCAACAATGGAAGTGATCAAACTTGA 1461 49.28 MDMEDDDYPHLSDLRHLLSTASIPHHDLFSASASLPFRHHPTPFDLVPIMPPRDPHFVSTPPPTAFDLDTTPDPAAARWPRHETLTLLDIRSRLHSKFKQANQKGPLWDDVSRIMAEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETSNATSLQDSHFVGDSNLRSQQNGSNDPPTSHDALLKHYCDSLSLSNASDFETSASSDSNDDLGSVGVMENDSTEKRRKRRGGKCWKAQIKMFIDSEMKKLIDKQETWLEKLMKTLEQKEKERVVREEEWRRQEVSRIDRERNFWAKERAWIEARDAALMEALQKLTGSRESREFNSSPNHGTIMTERRRNNSENQNEDESEILNISTARELVSSNNYQRKLMDQGNKKRKENSRPATTPTTTYNLYFQNDSSLYGGSGAYGGGTEMKEQSPNSSNAGGGGGQAVQDSCFRFLIGEGDQSQSGLWENFGLKLNNGSDQT 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43214335 43217395 + Sed0000339.1 Sed02g0557 704225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0557 486 MobiDBLite consensus disorder prediction 335 370 - -
Sed02g0557 486 MobiDBLite consensus disorder prediction 218 248 - -
Sed02g0557 486 MobiDBLite consensus disorder prediction 176 197 - -
Sed02g0557 486 MobiDBLite consensus disorder prediction 403 423 - -
Sed02g0557 486 MobiDBLite consensus disorder prediction 434 449 - -
Sed02g0557 486 Gene3D - 79 141 - -
Sed02g0557 486 Coils Coil 269 296 - -
Sed02g0557 486 Pfam Myb/SANT-like DNA-binding domain 78 164 IPR044822 -
Sed02g0557 486 MobiDBLite consensus disorder prediction 336 353 - -
Sed02g0557 486 MobiDBLite consensus disorder prediction 218 234 - -
Sed02g0557 486 CDD GT1 78 143 - -
Sed02g0557 486 PANTHER FI21293P1 73 405 - -
Sed02g0557 486 FunFam trihelix transcription factor PTL-like 79 141 - -
Sed02g0557 486 MobiDBLite consensus disorder prediction 176 200 - -
Sed02g0557 486 ProSiteProfiles Myb-like domain profile. 71 136 IPR001005 -
Sed02g0557 486 MobiDBLite consensus disorder prediction 382 450 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0557 Sed-Chr2:43214335 Sed04g1456 Sed-Chr4:29164440 2.70E-127 dispersed
Sed02g0557 Sed-Chr2:43214335 Sed04g1455 Sed-Chr4:29164440 1.70E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37527 PF13837 Myb_DNA-bind_4 8.50E-19 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0557 - - - 0.0