Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0567 ATGGAAATGCCCGGCAGAAGGCTGAACTACACGTTTCTCAGTCAAATTCCAGACGACCAGTACAGCGGCGGCGGCGTTTCCGGAGCTTCGTCATCGGGAGAGGGGAAGATCGACAAGAGGAAGCTGGATTGGGAATCTGGTGCTGATAATCACCGGGCGGGCCAGCAGCAACAGCAGGTTAATTGGATCGGAAATATGTACTCGGCGTTTGGTTTGCAGAGGCAGTCCAGCGGCAGCAGCTTTGGAGAGAGCTCGATCTCCGGGGAGTATTACGCACCGTCGCCGTCGAATACGGTGGCGAATGAGGCGGAGGATGTGCTTAGGATTGGAGGCGATTCGAGAGCGCTGGCGGCCGAGATGGCGGCTGGGACTGGTGGATCTTCGTATAAGAGCTGGGCGCAACAGACGGAGGAGAGCTATCAACTGCAGTTGGCATTGGCGCTTCGGCTTTCATCGGTGGCGACTTGTGCTGATGATCCTAATTTCTTGAATCCATTTCAGGATGATCCAGCTTTAAGGAGGTCGATTAGCTCTGCCGAGGCTGTTTCTCATCGATTTTGGGTGAATGGTTGTCTATCATACTTTGACAAAGTTCCTGATGGGTTTTATCTAATCCGTGGAATGGATCCATATGTATGGACTGTGTGCACCAGTCTTCCTGATAGTGATCGCATGCCATCAATTGACTCTCTAAAGTCTGTTGATCCGAGCACAGATTCTTCAATTGAAGTTGTTTTGATTGATCAGCGCACTGATCCAAACTTAAAGGACCTCCAAAATTGGGTCCAAAGCATTTCTTGCAGCTCTATAACCACAAAAGAGGTCGTAGACCAGCTTGCAAAACTTGTCTGTAGGAGTTTGGGTGGCTCAGTTTCTGGAGAAGAAATGTTTATGTCCATCTGGAAGGAGTGCAGTGATAACTTGAAGGAGACTTTAGGCTCAGTAGTTGTTCCTCTTGGGGCACTCTCTGTAGGACTATGCCGACATCGTGCTCTTCTTTTCAAAGTGTTAGCAGATGCAATTGATTTACCCTGTCGGGTAGCCAAGGGTTGTAAATATTGCTCAGACCATGATTCTTCTTCTTGTCTCGTGCAGTTTGGGCTTGACAAGGAATATCTGGTTGACTTAATTGGCAATCCTGGTTGCTTACATGAGCCTGATTCCTTACTCAATGGTCCATCCTCCATTTTGATCTCCTCACCATTGCGATTTCCACGACTAAAGCCAGTAGACCCTGCCGTTGATTTCAGGTCACTGGCTAAACAGTACTTTTCAGATTGTCAGTTGCTTAATGTTGTTTTTGATGAGTGTTCTTCAGAAATGATTGTGGATGGAGAAGATAGCGCACTCCCCTCGTATCTAAAGCAGTTCGATAGGAAATTCACAAACAGAAGCAACCAAATGCTTGCCACTGGTGATCATGATGAAAAATCCATCTTACAGCATGCAAAAAATTCACAGCCTAACTCCCAAGACAGAGATTTCCAACTATTTAAACCGCCACAACCAAATGCCCTAGTTGAGGATCCAATCCAACTGAAGTACAGCCGTAGAAGTGCACAGTCACTTTTTGGTATGCCCCAGCTAAGGATGGATTCTTCTATGGACCTAAGGATTGGACAGGGAGGTCAGCGAATACCAAGCACTAAGAGTAAAACAATTCCCATTGATGCAGAGGATTTGGACATTCCATGGGACGATCTTGTTTTAAAAGAAAGAATTGGAGCAGGTTCCTTTGGAACTGTACATCGTGCTGATTGGCATGGATCGGACGTTGCTGTGAAGATTCTCACAGAACAAGATTTCCATCCTGAACGTGTTAACGAGTTTCTGAGAGAGGTTGCTATCATGAAATCCTTACGACATCCTAACATCGTACTGTTAATGGGTGCGGTGACCAAGCCACCAAACCTGTCCATTGTCACTGAATATCTATCCAGAGGTAGCTTGTATAGGCTTTTGCATAAGTCAGGTGTCAAAGACATAGATGAAACACGTCGGATAAATATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTTCATAGACGTGACCCTCCAATTGTTCATCGTGATTTAAAATCACCTAATCTTTTAGTCGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCTCGCTTAAAGGCACGCACATTTCTTTCATCAAAATCCGCAGCTGGAACACCCGAGTGGATGGCACCAGAAGTACTACGTGATGAGCCTTCAAATGAAAAATCAGATGTTTACAGCTTTGGAGTGATTTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTTGCAGCTGTTGGATTTAAGCGCAAGAGGCTTGAAATCCCACGTGATGTAAATCCCAAGTTGGCTTCCTTAATAGTGACTTGCTGGGCCGACGAGCCCTGGAAACGTCCATCTTTTTCGAGCATAATGGAAACCTTGAAGCCGATGACTAAACAAGCGCCACCGCAACAAGGTCGTGCATAG 2508 46.05 MEMPGRRLNYTFLSQIPDDQYSGGGVSGASSSGEGKIDKRKLDWESGADNHRAGQQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPSPSNTVANEAEDVLRIGGDSRALAAEMAAGTGGSSYKSWAQQTEESYQLQLALALRLSSVATCADDPNFLNPFQDDPALRRSISSAEAVSHRFWVNGCLSYFDKVPDGFYLIRGMDPYVWTVCTSLPDSDRMPSIDSLKSVDPSTDSSIEVVLIDQRTDPNLKDLQNWVQSISCSSITTKEVVDQLAKLVCRSLGGSVSGEEMFMSIWKECSDNLKETLGSVVVPLGALSVGLCRHRALLFKVLADAIDLPCRVAKGCKYCSDHDSSSCLVQFGLDKEYLVDLIGNPGCLHEPDSLLNGPSSILISSPLRFPRLKPVDPAVDFRSLAKQYFSDCQLLNVVFDECSSEMIVDGEDSALPSYLKQFDRKFTNRSNQMLATGDHDEKSILQHAKNSQPNSQDRDFQLFKPPQPNALVEDPIQLKYSRRSAQSLFGMPQLRMDSSMDLRIGQGGQRIPSTKSKTIPIDAEDLDIPWDDLVLKERIGAGSFGTVHRADWHGSDVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLLMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKRKRLEIPRDVNPKLASLIVTCWADEPWKRPSFSSIMETLKPMTKQAPPQQGRA 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43317856 43337120 - Sed0014871.1 Sed02g0567 704235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0567 835 Gene3D Transferase(Phosphotransferase) domain 1 647 833 - -
Sed02g0567 835 ProSiteProfiles Protein kinase domain profile. 568 825 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0567 835 PRINTS Tyrosine kinase catalytic domain signature 682 700 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0567 835 PRINTS Tyrosine kinase catalytic domain signature 729 739 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0567 835 PRINTS Tyrosine kinase catalytic domain signature 792 814 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0567 835 PRINTS Tyrosine kinase catalytic domain signature 642 655 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0567 835 PRINTS Tyrosine kinase catalytic domain signature 748 770 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0567 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 688 700 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0567 835 SMART serkin_6 568 825 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0567 835 FunFam Serine/threonine-protein kinase isoform 1 558 646 - -
Sed02g0567 835 CDD STKc_MAP3K-like 574 821 - -
Sed02g0567 835 Pfam Ethylene-responsive protein kinase Le-CTR1 179 384 - -
Sed02g0567 835 Pfam Protein tyrosine and serine/threonine kinase 569 821 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0567 835 SUPERFAMILY Protein kinase-like (PK-like) 549 821 IPR011009 -
Sed02g0567 835 ProSitePatterns Protein kinases ATP-binding region signature. 574 595 IPR017441 GO:0005524(InterPro)
Sed02g0567 835 Gene3D Phosphorylase Kinase; domain 1 561 646 - -
Sed02g0567 835 PANTHER SERINE-THREONINE PROTEIN KINASE 106 824 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed02g0567 835 FunFam Serine/threonine-protein kinase CTR1 647 831 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0567 Sed-Chr2:43317856 Sed14g0331 Sed-Chr14:3397525 2.50E-282 dispersed
Sed14g0330 Sed-Chr14:3397525 Sed02g0567 Sed-Chr2:43317856 2.10E-286 wgd
Sed02g0567 Sed-Chr2:43317856 Sed04g1447 Sed-Chr4:29042025 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78794 PF07714 PK_Tyr_Ser-Thr 2.10E-70 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0567 K14510 - csv:101208452 1425.61