Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed02g0572 | ATGGAGTTTGAAATTGCAGCTTTCATTCTAGTTTCCTTCCTCTGGGGCTTGTGGGTGTGGCGCCGCCGTGGTTCGGCGGCGTCGGGGCGGCTTCCGCCAGGGCCACGGCGGTGGCCTGTGGTCGGAAACCTGCTCCAACTCGACTCCTCCGCGCACACATCCTTCACAAAACTGGCCGCCCAACACGGCCCGATCATGACCGTCCACCTCGGGTCCATGACGACGGTGGTGGTGTCGACGAGCACGGCGGCGCGGGAGATGTTCAAGACCAACGACGCGCCGCTGTCGGGGCGCATGATATACGAGGCGATGAAAGGGAACCGCGGCATGGAAGGCTCCCTCATCGCCTCCCAGTACGGGCCCCACTGGCGGATGCTGCGGCGGCTGGCGACGACCGAGCTCTTCGTCGGCAGCCGCCTCGACGCCATGGGGCACGTGAGGAGGCGGTGCGTGGACGCCATGGTGCGGTTCGTGGCGGAGGAGGCAACCAAACGCGGTGGCGCGTGCGAACACCCGCCGACGATCGACTTGGGGCGGTTTTTCTTCCTGATGGGGTTTAATTTAATCGGGAATCTGATATTTTCGAAGGATCTTTTGGACCCGAACTCGAAACGGGGGAATGGGTTTTACTTCCACGCCCGGAAGGTGATGGAGCTGGCCGGAAAGCCGAACGTGGCGGACTTTCTGCCGGGGCTCCGGTGGGTCGACCCGCAGGGGATAAGGAGGAAAACCCAGTTCCATGTGGACAGAGCGTTTGAAATTGCTGGGGAGTTTATAAAGGAGAGATTAAAGGAGAAAGAAATGGAAGACAAAAAAGATGGGAAAAAGGATTATTTGGATGTTCTTTTGGAGTTCCGTGGCGATGGCGTCAACGAATCTTCTCGATTCTCTTCTTGGATTATCAACGTTATCGTCCTCGAGATGTTCACGGCGGGGACGGACACAACCACCAGCACACTAGAATGGGCAATGGCGGAGCTCCTCCACAACCCGGTGGCGCTACACAAACTTCAGGCGGAGCTCCGATCAAAAATCCCACCCGACGGCAACTTAGAAGAGTGCCATCTCCAAAGCCTCCCATACCTGGACGCCGTCGTGAAAGAAACCCTCCGCCTCCACCCGCCGCTGCCGTTCCTGTTCCCGAGGATGGCGATGAAGCCCTGCACCGTCCTCGGCTATGGCATCCCGGCAGAAACCCAAGTCCTCGTCAACGTTTGGGCCATCGGCCGGGACCCCGACAACTGGAAAAACGCTTCTGCTTTCTCGCCGGAGAGATTCTTGGGCGGCGGCGGAATGGACTTCAAAGGTCAACACTTTGACTTCATTCCGTTCGGGTCCGGGCGCCGCATGTGCCCCGCGGTGCCGCTGGCTTCGAGGGTTCTTCCAATGGCGTTGGGGTCGTTGGTTCTGCTGTTTGATTGGAGTCTGCCGGACGGAATGTCGCCGGAGGAGATGGACATGTCGGAGCAAATGGGGATTACTCTTAGGAAGAAAATTCCTTTGATGGCCATTCCTACTCTTCATAATCGTGGTTGA | 1536 | 58.46 | MEFEIAAFILVSFLWGLWVWRRRGSAASGRLPPGPRRWPVVGNLLQLDSSAHTSFTKLAAQHGPIMTVHLGSMTTVVVSTSTAAREMFKTNDAPLSGRMIYEAMKGNRGMEGSLIASQYGPHWRMLRRLATTELFVGSRLDAMGHVRRRCVDAMVRFVAEEATKRGGACEHPPTIDLGRFFFLMGFNLIGNLIFSKDLLDPNSKRGNGFYFHARKVMELAGKPNVADFLPGLRWVDPQGIRRKTQFHVDRAFEIAGEFIKERLKEKEMEDKKDGKKDYLDVLLEFRGDGVNESSRFSSWIINVIVLEMFTAGTDTTTSTLEWAMAELLHNPVALHKLQAELRSKIPPDGNLEECHLQSLPYLDAVVKETLRLHPPLPFLFPRMAMKPCTVLGYGIPAETQVLVNVWAIGRDPDNWKNASAFSPERFLGGGGMDFKGQHFDFIPFGSGRRMCPAVPLASRVLPMALGSLVLLFDWSLPDGMSPEEMDMSEQMGITLRKKIPLMAIPTLHNRG | 511 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 43374439 | 43378692 | - | Sed0004147.1 | Sed02g0572 | 704240 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed02g0572 | 511 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 444 | 453 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed02g0572 | 511 | CDD | CYP76-like | 59 | 505 | - | - | |
| Sed02g0572 | 511 | PANTHER | CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED | 7 | 506 | - | - | |
| Sed02g0572 | 511 | Pfam | Cytochrome P450 | 32 | 496 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0572 | 511 | SUPERFAMILY | Cytochrome P450 | 28 | 505 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0572 | 511 | Gene3D | Cytochrome P450 | 25 | 505 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0572 | 511 | FunFam | Cytochrome P450 76C4 | 23 | 504 | - | - | |
| Sed02g0572 | 511 | PRINTS | E-class P450 group I signature | 59 | 78 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0572 | 511 | PRINTS | E-class P450 group I signature | 363 | 381 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0572 | 511 | PRINTS | E-class P450 group I signature | 451 | 474 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0572 | 511 | PRINTS | E-class P450 group I signature | 300 | 317 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0572 | 511 | PRINTS | E-class P450 group I signature | 404 | 428 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0572 | 511 | PRINTS | E-class P450 group I signature | 320 | 346 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0572 | 511 | PRINTS | E-class P450 group I signature | 441 | 451 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0572 | 511 | PRINTS | E-class P450 group I signature | 83 | 104 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0572 | 511 | PRINTS | P450 superfamily signature | 442 | 451 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0572 | 511 | PRINTS | P450 superfamily signature | 311 | 328 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g0572 | 511 | PRINTS | P450 superfamily signature | 364 | 375 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g3628 | Sed-Chr1:65522747 | Sed02g0572 | Sed-Chr2:43374439 | 2.50E-85 | dispersed | |
| Sed02g0572 | Sed-Chr2:43374439 | Sed05g0854 | Sed-Chr5:6803491 | 2.70E-90 | dispersed | |
| Sed02g0572 | Sed-Chr2:43374439 | Sed05g0156 | Sed-Chr5:948975 | 2.50E-99 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed02g0572 | - | - | - | 0.0 |