Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0573 ATGGTGTTCATGGAGATGGGTTTCAAGGTTTTCAGTTCCGCCATAGCTTTTCTTCTTCTAGCTTCTTCTTCTTCTTCTCTGGGTTTTGATGATTCTTCTGCTCTGACTCGCTTCCGTCTTCAAGCCGACTCCCATGGCGGCCTTCTCGCAAACTGGACCGGTTCAGACGCTTGTGGCTCTTCCTGGCGTGGAGTTCACTGCTCCGTTAATGGCCGCGTGGTTGCTCTTTCGCTTCCTTCCATGAACTTGCGAGGTTCGATTGAGTCCCTTGCGCCGCTGGACCAGCTCCGCCTTCTCGACCTTCACGACAATCGCTTAAACGGCACCATCTCGCCGGTTCTGAACTGTACGAATCTCAAGCTGCTGTATCTCTCCGCCAACGACTTCTCCGGCGAGATTCCGCCGGAGATTTCGTCCCTCCGGCGACTTCTACGGTTGGATTTGTCCGATAACAACATCCGCGGCGGGATTCCGGAGGATGTGGCGAAATTGTCTCGGCTTCTCACGCTTCGTCTGCAGAACAATGTCCTCTCCGGTACGGTTCCAGATCTCTCTGTTTCGCTTGTGAATCTCACCGACGTTGATTTAACGAACAATGAACTCTACGGCCGGTTACCGGACGGGATGGTGAAGAGATTCGGAGAGAAGAGTTTCGCCGGTAACGAAGGAGTGTGTGGATCGAGTCCGTTACCGATCTGCTCGGTTACCGGTTCATCGCCGGCGTCGGATTCCGGTAGAACCGTACCTTCGAATCCAAGCTCATTGCCGCAAAACCCTAACATCAGTGCGAATGTTAAAGAATCGCGAAAAGGACTCAGTCCTGGCGCAATTGTCGCGATTGTGATCGCGAATTGCGTTGCGTTGCTTGTGATCATCTCCTTCATCGTCGCGTATTACTGCGCTCGTGATCGGAGTTCGAGCTCCATGGCCGGAAGCGACAAGAGGAGAAGGAGCGGAAGCAGCTATGGGAGCGAGAAGAAGGTTTACGCTAATGGCGGCAGCGGCGACGGCGACAGCGACGGAACGAACGCTACGGATCGGAGCAAACTGGTGTTCTTCGATTGGAAGAAGCAATTCGAGCTCGAGGATTTGCTCCGAGCGTCGGCGGAGATGCTCGGAAAAGGAAGCTTGGGGACGGTGTACAGGGCGGTGCTCGACGACGGCTGTACTGTGGCTGTGAAGAGGCTGAAGGATGCAAATCCATGTCCGAGGAAGGATTTTGAACAGTATATGGATGTGATTGGGAAGTTGAAGCATCCAAATGTTGTTAGATTGAGAGCTTTTTACTATGCTAAAGAAGAAAAGCTTCTGGTTTATGATTATCTTCCTAATGGAAGCTTGCATTCTCTCCTCCATGGTAATCGTGGCCCAGGAAGAATTCCATTGGATTGGACGACAAGGATCAGCTTGGTTTTAGGAGCTGCTCGTGGTTTAGCAAGAATCCATGGAGAATACAGTGCTTCAAAGATTCCCCATGGAAACATCAAGTCTTCTAATGTTCTTCTCGACAAAAATGGAGTAGCTTGCATTTCTGATTTTGGGTTGTCTTTACTTCTCAACCCTGCCCATGCCATTGCTAGGTTGGGAGGGTACAAGGCCCCCGAACAAGACGAGACGAAACGGCTCTCTCAAAAGGCGGATGTTTATAGCTTTGGAGTCTTGTTGCTTGAAGTCTTGACCGGGCGTGCACCGTCGCTCTACCCGTCACCTTCGAACCCGCGTAAGGACGAGGAAGAGCACGCGGTGGACCTCCCGAAATGGGTCCGATCCGTGGTGAAGGAAGAGTGGACAGCTGAGGTGTTTGACCCTGAGCTCTTGAGGTACAAGAACATTGAGGAGGAGCTTGTGTCCATGCTTCATGTTGGGCTGTCTTGTGTTCTTCCTCTACCTGAGAAGAGACCAACGATGGCAGAAGTGGCGAAGATGATCGAAGATATCAGGGTCGAGCAGTCCCCACTCGGAGAAGATTACGACGAATCGCGTAATTCGCTTTCGCCTTCCCTTGCCACCACAGAAGATGGTATGGTGTAG 2031 51.85 MVFMEMGFKVFSSAIAFLLLASSSSSLGFDDSSALTRFRLQADSHGGLLANWTGSDACGSSWRGVHCSVNGRVVALSLPSMNLRGSIESLAPLDQLRLLDLHDNRLNGTISPVLNCTNLKLLYLSANDFSGEIPPEISSLRRLLRLDLSDNNIRGGIPEDVAKLSRLLTLRLQNNVLSGTVPDLSVSLVNLTDVDLTNNELYGRLPDGMVKRFGEKSFAGNEGVCGSSPLPICSVTGSSPASDSGRTVPSNPSSLPQNPNISANVKESRKGLSPGAIVAIVIANCVALLVIISFIVAYYCARDRSSSSMAGSDKRRRSGSSYGSEKKVYANGGSGDGDSDGTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMDVIGKLKHPNVVRLRAFYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSASKIPHGNIKSSNVLLDKNGVACISDFGLSLLLNPAHAIARLGGYKAPEQDETKRLSQKADVYSFGVLLLEVLTGRAPSLYPSPSNPRKDEEEHAVDLPKWVRSVVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLSCVLPLPEKRPTMAEVAKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDGMV 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43436816 43439509 + Sed0008478.1 Sed02g0573 704241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0573 676 MobiDBLite consensus disorder prediction 652 676 - -
Sed02g0573 676 FunFam pollen receptor-like kinase 1 337 441 - -
Sed02g0573 676 FunFam Nuclear pore complex protein NUP107 28 183 - -
Sed02g0573 676 CDD STKc_IRAK 372 646 - -
Sed02g0573 676 Gene3D Phosphorylase Kinase; domain 1 339 441 - -
Sed02g0573 676 MobiDBLite consensus disorder prediction 236 266 - -
Sed02g0573 676 SUPERFAMILY L domain-like 30 208 - -
Sed02g0573 676 Gene3D Transferase(Phosphotransferase) domain 1 442 664 - -
Sed02g0573 676 PANTHER OS05G0588300 PROTEIN 16 652 IPR050994 -
Sed02g0573 676 SUPERFAMILY Protein kinase-like (PK-like) 370 643 IPR011009 -
Sed02g0573 676 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 442 655 - -
Sed02g0573 676 Pfam Leucine Rich Repeat 143 164 IPR001611 GO:0005515(InterPro)
Sed02g0573 676 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Sed02g0573 676 Gene3D Ribonuclease Inhibitor 112 234 IPR032675 -
Sed02g0573 676 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Sed02g0573 676 Pfam Protein kinase domain 370 641 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0573 676 ProSiteProfiles Protein kinase domain profile. 366 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0573 676 MobiDBLite consensus disorder prediction 306 342 - -
Sed02g0573 676 Gene3D Ribonuclease Inhibitor 26 111 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0573 Sed-Chr2:43436816 Sed05g3338 Sed-Chr5:42659736 3.00E-92 dispersed
Sed02g0573 Sed-Chr2:43436816 Sed06g1908 Sed-Chr6:43437395 2.30E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78795 PF00069 Pkinase 4.10E-33 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0573 - - - 0.0