Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0588 ATGGCAGATTCCGCAGCCCCAGACTCCGCCACCGGCAACGCATCGTCCGACGCCGCCCCGACCACCAGCGTCGACACCGCAGGGACGAGTCCTGCCCCACCCGTAGTTTCACCGCCGCCCAAACGTGCTTGGGCCGATGAAGAAGACGACGATGTGGATGCTCCTGGAGATTCATCCTCTGCGCCTACCGAGTTCATGGAATCCCTCAAAATCAAGGATGAATCAAATCTCGAAGAACCTGAAGACTCTAACATCACAGCGGTGACAATCGATGGTACTCCTTATACATCAGCTAGAACTTTTGAGGAGCTGAATCTGTCACCCGAGTTGTTGAAGGGTTTGTATGTAGAGATGCAATTCCAGAAGCCAAGTAAAATTCAAGCTATAAGTTTGCCTATGATTTTGACTCCTCCCTACAGAGATTTAATTGCTCAAGCACACAATGGTTCTGGCAAGACTACCTGTTTTGTACTTGGGATGTTGAGTCGTGTTGATCCGAAATTGAAGGCTCCTCAGGCTCTTTGCATATGTCATACGAGGGAGTTAGCCATTCAGAATATTGAGGTTCTTAATAAAATGGGAAAATACACCGGGATAACCTCAGAGTGTGCGGTTCCTTTAAGCAGTGCTAACTATGCACCTATTTCTAAGCGAGCACCAGTAACTGCACAAGTTGTGATTGGAACTCCTGGCACTATAAAGAAATGGATGTCGGCGAGGAAGCTGGGAGCAAGTTGCATAAAGATTCTTGTTTTTGATGAGGCCGATCATATGCTTGCTGAGGATGGATTTAAGGATGATTCATTGAGAATCATGAAGGACATTGAGAAAAGTACCCCTCATTGCCAGGTGCTTCTGTTCTCTGCTACATTCAACGAGACTGTTAAAAACTTCGTTTCTAGGGTTGTTAAAGACCACTACAACCAACTTTTTGTAAAGAAAGAAGAACTATCTCTTGATGGTGTGAAGCAATACAAGGTTATATGTCCAGACGAATTATCAAAAGTTCGGGTCATAAAAGATAGAATTTTGGAATTAGGAGAGAATGTGGGTCAGACGATTATATTTGTGAGAACAAGAAACAGTGCTAGCATGTTACATAAGGCGCTGGTTGATTATGGTTATGATGTGACTACCATTCAAGGGGCAATGACAGTGGACGATAGAGACAAAATCATCAAAGAGTTCAAGGATGGTTTGACTAAAGTTCTTATTTCGACTGACCTCCTAGCTCGAGGCTTTGACCAGCAACAGATCAATCTGGTTATCAATTATGATCTTCCTCTGAAACACGAATCTTCAGAAGCAAATAGATTCAGATCTTCACCAGCCGAGCCTGACTATGAGGTGTACCTTCACAGGATTGGTCGGGCAGGTCGTTTTGGGCGCAAGGGAGCTGTGTTTAACTTGGTCTGCGATGACATGGAACACTTGCGAATGGGGAAAATTCAGAACCACTTTGACTCTGAAATAATAGAGATTCGAGACTCTGACGAGGACTTTAAAGCAGCCTTAAAATCTGCTGGTTTGCTTTGA 1536 44.53 MADSAAPDSATGNASSDAAPTTSVDTAGTSPAPPVVSPPPKRAWADEEDDDVDAPGDSSSAPTEFMESLKIKDESNLEEPEDSNITAVTIDGTPYTSARTFEELNLSPELLKGLYVEMQFQKPSKIQAISLPMILTPPYRDLIAQAHNGSGKTTCFVLGMLSRVDPKLKAPQALCICHTRELAIQNIEVLNKMGKYTGITSECAVPLSSANYAPISKRAPVTAQVVIGTPGTIKKWMSARKLGASCIKILVFDEADHMLAEDGFKDDSLRIMKDIEKSTPHCQVLLFSATFNETVKNFVSRVVKDHYNQLFVKKEELSLDGVKQYKVICPDELSKVRVIKDRILELGENVGQTIIFVRTRNSASMLHKALVDYGYDVTTIQGAMTVDDRDKIIKEFKDGLTKVLISTDLLARGFDQQQINLVINYDLPLKHESSEANRFRSSPAEPDYEVYLHRIGRAGRFGRKGAVFNLVCDDMEHLRMGKIQNHFDSEIIEIRDSDEDFKAALKSAGLL 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43554557 43558091 + Sed0013470.1 Sed02g0588 704256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0588 511 CDD SF2_C_DEAD 322 471 - -
Sed02g0588 511 SMART ultradead3 119 325 IPR014001 -
Sed02g0588 511 MobiDBLite consensus disorder prediction 8 30 - -
Sed02g0588 511 Gene3D - 317 502 IPR027417 -
Sed02g0588 511 Pfam Helicase conserved C-terminal domain 338 462 IPR001650 -
Sed02g0588 511 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 93 479 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0005634(PANTHER)|GO:0010494(PANTHER)|GO:0016973(PANTHER)
Sed02g0588 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 474 IPR027417 -
Sed02g0588 511 Gene3D - 82 316 IPR027417 -
Sed02g0588 511 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 128 IPR014014 GO:0003724(InterPro)
Sed02g0588 511 MobiDBLite consensus disorder prediction 1 64 - -
Sed02g0588 511 Pfam DEAD/DEAH box helicase 125 297 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Sed02g0588 511 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 309 IPR014001 -
Sed02g0588 511 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 338 502 IPR001650 -
Sed02g0588 511 SMART helicmild6 364 462 IPR001650 -
Sed02g0588 511 CDD DEADc_DDX19_DDX25 106 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0588 Sed-Chr2:43554557 Sed05g1301 Sed-Chr5:25302551 6.40E-55 dispersed
Sed02g0588 Sed-Chr2:43554557 Sed04g1424 Sed-Chr4:28816691 2.30E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0588 K18655 - csv:101222195 770.77