Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0601 ATGAGGATCAAAACTAACTTCTTCTTTTGGCTCTATACCTTTGTCATTGTAGCTCTTTCCTTCACCATTGCTTCCCGCTCATTCCCCCATTTCTCGACCGCTATCGGTCCTCGAGACGGTGCTTTCAAGCTTGGCATTTTCCGCAGTCTAGTGAAAGAGAGTGGCTTGGATGATCTCTTGTCTCTTGTAATTCAAATTGTGTTCAAACACCAATATCATGGATGGAAACAAAGAAGTTGTGATGAGAAGAAATGGAACTCAGAGTTGATATCAATGTACAATGTTTCACTTATTTTGAGTGTTGATTTGAAGGGATGTGCAAATTTTAGCAGTGTGCAAAAGGCAGTGGATGCTGTTCCTGATTTTGCCTCTTCAAGAACTCTTATCATTATTGACTCTGGAATTTACAGGGAGAAGGTAGTGATAAACGCGAACAAAACAAACATGATAATCGAAGGACAGGGTTACCTCAACACAGCAATAGAATGGAATGACACTGCCAATTCCACTGGTGGCACCACTTATAGCTCTTCTGTCACCATCTTTGCCTCAAACTTCACTGCCTTCAACATCAGCTTCAAAAACACAGCTCCTGGGGCAGATCCAGGGACAGTTGGAGGACAAGCAGTGGCAGTTAGAATAGCAGGAGATGAAGCTGCTTTCTATGGATGCGGATTTTATGGAGCTCAAGACACACTCTATGATGACAAAGGAAGACATTACTTCAAACAATGTTTCATTCAAGGATCCATTGATTTCATCTTTGGCAACGCTCGATCGCTATATGAGGGTTGTAGCATCAAGTCAATAGCAAAGGAAGTGTGGGGCACTGGTGGGGTAAGTGGATCCATCACAGCTCAAGGAAGGCAATCAAGCAGCGAGCAAACTGGTTTTGCTTTCGTCAACTGCACCATCGATGGCTCGGGGAAGGTGTGGCTCGGCCGCGCATGGGGCGCCTCTGCCTCTGTCATCTTCTCCTACACTTACATGACCGACGTCGTTGCTGGGGACGGATGGAACGACTGGAGAGACCCTTCAAGAGACCAGAGTGTGTTGTTTGGGGAATATGAATGCTTTGGAGATGGAGCAAGTCATAGGTTGAGAGTGCCCTATGCAAAGCAACTCAATCAAGTAGAAGCTCAACCTTACTTGGATGTTTCTTATGTTGATGGAAATCAATGGCTCATCTATCAACAACCCACTTTCTCTACCATTTAA 1218 44.66 MRIKTNFFFWLYTFVIVALSFTIASRSFPHFSTAIGPRDGAFKLGIFRSLVKESGLDDLLSLVIQIVFKHQYHGWKQRSCDEKKWNSELISMYNVSLILSVDLKGCANFSSVQKAVDAVPDFASSRTLIIIDSGIYREKVVINANKTNMIIEGQGYLNTAIEWNDTANSTGGTTYSSSVTIFASNFTAFNISFKNTAPGADPGTVGGQAVAVRIAGDEAAFYGCGFYGAQDTLYDDKGRHYFKQCFIQGSIDFIFGNARSLYEGCSIKSIAKEVWGTGGVSGSITAQGRQSSSEQTGFAFVNCTIDGSGKVWLGRAWGASASVIFSYTYMTDVVAGDGWNDWRDPSRDQSVLFGEYECFGDGASHRLRVPYAKQLNQVEAQPYLDVSYVDGNQWLIYQQPTFSTI 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43742696 43747140 + Sed0016421.1 Sed02g0601 704269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0601 405 FunFam Pectinesterase 93 400 - -
Sed02g0601 405 ProSitePatterns Pectinesterase signature 2. 247 256 IPR033131 -
Sed02g0601 405 Pfam Pectinesterase 103 391 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed02g0601 405 Gene3D - 94 403 IPR012334 -
Sed02g0601 405 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 63 395 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Sed02g0601 405 SUPERFAMILY Pectin lyase-like 95 395 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0601 Sed-Chr2:43742696 Sed07g0918 Sed-Chr7:6660772 1.00E-100 dispersed
Sed02g0601 Sed-Chr2:43742696 Sed12g1810 Sed-Chr12:29193164 1.90E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0601 - - - 0.0