Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed02g0627 | ATGTCACCAGAATCTGAGGAGATAAACAGAAGCGAGCAATGGAAATGGTCGGAAATGCAAGGCCTTGAGCTCGCCTCTTCGGATCCACCAGCCCCAACCGCCAAACCCACAGACCCTGAACAAGGAACTGGGCGGCCCACAAGGGGAGAAATGGAGCCTGCAAGTGGTTCCACGAAGGACATCGCCGCCGTTGGATTTGGCGAGCTCTTCCGATTCGCCGATGGGTTGGATTGTGTTCTGATGGCAATTGGGTCGGTGGGAGCCTTGGTCCACGGCTGTTCTCTGCCTCTGTTTCTTCGATTCTTTGCTGATCTTGTTAACTCTTTCGGGTCTAATGCCAACGATGTGGATAAAATGATGCAGGAGGTTTTAAAGTACGCATTCTACTTTCTGGTGGTTGGAGCTGCGATTTGGGCATCATCCTGGGCAGAGATTTCATGTTGGATGTGGACCGGCGAGCGGCAGTCCACCAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGACATTCAGTATTTCGACACCGAGGTGCGAACCTCGGATGTCGTTTTCGCCATCAACACGGACGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATTCACTACATGGCAACTTTTGTTTCTGGATTCGTTGTGGGATTCACGGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCTGTGGTTCCTCTCATTGCAGTAATTGGTGGCATCTATGCCACCACCATAGCTAAGCTCACGGCCAAGACTCAAGAAGCTCTTTCAGATGCTGGGAATACAGTTGAACAGACAATAGTTCAAATCCGAGTTGTTCTTGCCTTTGTTGGGGAATCGAGGGCCTTGCAGAGGTACTCCTCTGCATTGAAGATTGCTCAAAAGATAGGTTACAAAAGTGGTTTCTCTAAAGGTATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGCTGTTATGCTCTTCTGCTCTGGTATGGAGGTTATCTTGTTAGACACCACGCTACCAATGGCGGTCTTGCCATTGCCACCATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGTATGAGTTCATTCGCCAAGGCTAAAGTTGCAGCTGCCAAAATCTACCGTATAATCGACCACAAGCCTACTTTAAACCGCAACAATGAATCTGGATTGGAATTGGAGTCAGTTTCAGGACTGGTTGAGCTGAAGAATGTAGATTTCTCATACCCATCAAGGCCGGATGTAAGAATCCTCAACAATTTCTCCCTAACTGTCCCAGCCGGTAAAACGATAGCTCTGGTCGGTAGCAGTGGCTCCGGAAAGAGCACGGTCGTGTCCTTAATTGAAAGATTCTATGACCCCATTTCAGGCAAAGTTCTACTCGACGGGCGTGACATCAAAACTTTGAAGCTAAGATGGTTAAGGCAGCAGATAGGGCTGGTGAGCCAAGAACCTGCTCTTTTTGCCACCACCATCAAGGAAAACATTCTCTTGGGCAGACCTGATGCAGACCAAGTTGAAGTGGAGGAAGCTGCTCGAGTAGCCAATGCTCATTCATTCATTATCAAGCTTCCTGAAGGCTATGACACCCAGGTAGGGGAAAGAGGACTGCAGCTTTCTGGGGGACAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTAAAAAACCCTGCAATTCTACTCTTAGATGAGGCGACTAGTGCTTTGGACTCGGAGTCAGAAAAGCTTGTACAGGAGGCTCTTGATCGTTTCATGATCGGGCGGACTACTCTTGTTATTGCCCATCGCCTCTCTACCATTCGCAAGGCTGACCTAGTGGCTGTACTCCAACAAGGAAGTGTCTCTGAAATAGGAACACATGACGAGCTCTTTGCGAAAGGAGAGAATGGTGTATATGCCAAACTCATCCGAATGCAGGAGATGGCACATGAAACTGCTCTCAGTAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCTCCTATAATTGCACGGAATTCATCCTATGGACGATCGCCATATTCACGTCGGTTATCTGACTTTTCCACATCTGATTTTAGTCTATCTCTGGATGCTACACTTCCCAATTATAGGCTTGAAAAACTTGCCTTTAAAGAGCAAGCTGGTTCCTTTTGGCGTCTTGTGAAAATGAATTCACCCGAATGGCTCTATGCATTACTTGGCTCTATTGGCTCTGTTGTTTGCGGGTTTTTAAGCGCCTTCTTCGCATATGTTCTAAGTGCTGTTCTCAGTGTCTACTACAACCCAGACCATGCTTTCATGAGCAGAGAAATTATTAAATACTGCTACTTACTAATTGGACTTTCATCAGCTGCTCTTCTCTTCAATACAATACAACATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTGAGAGAGAAGATGTTGACATCAGTTCTGAAAAATGAAATGGCATGGTTTGACCAGGAAGAAAATGAGAGTGCCAAGATTGCTGCAAGGCTGGCCCTGGATGCTAATAATGTCAGATCAGCTATTGGAGACAGGATTTCTGTGATTGTACAGAACTCATCACTTATGCTAGTTGCATGCACCGCCGGATTCGTTTTGCAGTGGCGCCTTTCTCTTGTCCTTGTAGCTGTCTTCCCTGTGGTTGTGGCTGCCACTGTTCTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAATTAGCCGGGGAGGCCATAGCCAATGTAAGGACAGTTGCTGCATTCAACTCAGAGGAAAAGATTGTCAGACTTTTCTCTACCAACCTTGAGATCCCACTACGGCGCTGCTTTTGGAAGGGGCAGATTGCGGGTAGTGGATTTGGCATTGCTCAGTTCTCTCTATATGCTTCCTATGCTCTAGGCCTTTGGTATGCCTCATGGCTCGTGAAGCACGGGCTCTCCGATTTTTCGAAGGCGATTCGTGTTTTCATGGTCCTTATGGTTTCTGCAAATGGTGCAGCTGAAACACTCACTCTTGCTCCTGACTTTATTAAGGGTGGGCGAGCTATGCGTTCCGTCTTTTCCCTTCTTGACCGCAAAACTGAAATTGAACCTGATGATCCAGATGCCACCCCGGTCCCGGATAAACTTCGTGGGGAAGTTGAATTTAAACATGTTGACTTTTCCTACCCTACTCGTCCTGATATCCCTGTCTTCAGGGACCTTAGTTTGCGTGCTCGAGCAGGTAAGACTCTTGCTCTTGTTGGCCCTAGTGGGTGTGGCAAGAGCTCTGTCATTGCACTAGTCCAAAGATTCTATGAGCCATCATCAGGACGGGTCATGATTGATGGAAAGGATATTCGTAAGTTCAATCTCAAGTCCCTGAGAAAGCACATAGCAATGGTCCCGCAGGAGCCATGCTTATTCGCCGCTTCCATATATGATAATATCGCTTATGGCCATGAATCAGCCACCGAAACCGAGATCATCGAAGCTGCGACTTTGGCAAATGCCCATAAGTTCATATCTGGCTTGCCAGAAGGGTATAAAACTTCTGTTGGGGAGAGAGGAGTTCAACTATCAGGTGGACAAAAACAAAGAATTGCAATTGCACGTGCTCTTATCAGGAAGGCAGAGCTTATGCTGCTAGATGAGGCAACAAGTGCACTCGATGCAGAGTCAGAGCGATCTGTCCAGGAGGCTCTCGACCGAGCTTGTTCAGGAAAAACAACAATCGTAGTTGCTCATCGGCTATCAACCATCAGGAATGCTCATGTCATTGCAGTAATCGACGACGGTAAAGTTGCCGAACAGGGATCACACTCGCATTTGTTGAAGAATTATCCTGATGGTTGTTACTCCCGGATGATACAATTACAAAGATTCACACACAGCCAAGTCATTGGAATGACTTCAGGTTCAACTTCATCAGCAAGAACAAGAGATGAGGACAAAGATAGCTAG | 3981 | 47.35 | MSPESEEINRSEQWKWSEMQGLELASSDPPAPTAKPTDPEQGTGRPTRGEMEPASGSTKDIAAVGFGELFRFADGLDCVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSNANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYATTIAKLTAKTQEALSDAGNTVEQTIVQIRVVLAFVGESRALQRYSSALKIAQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGKVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEMAHETALSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATLPNYRLEKLAFKEQAGSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTSVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNSSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGIAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFSLLDRKTEIEPDDPDATPVPDKLRGEVEFKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATETEIIEAATLANAHKFISGLPEGYKTSVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNYPDGCYSRMIQLQRFTHSQVIGMTSGSTSSARTRDEDKDS | 1326 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 44084880 | 44091093 | + | Sed0013100.1 | Sed02g0627 | 704295 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed02g0627 | 1326 | Pfam | ABC transporter | 1079 | 1227 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed02g0627 | 1326 | ProSitePatterns | ABC transporters family signature. | 1199 | 1213 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed02g0627 | 1326 | ProSitePatterns | ABC transporters family signature. | 544 | 558 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed02g0627 | 1326 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 727 | 1042 | - | - | |
| Sed02g0627 | 1326 | Gene3D | - | 1049 | 1300 | IPR027417 | - | |
| Sed02g0627 | 1326 | Gene3D | - | 395 | 645 | IPR027417 | - | |
| Sed02g0627 | 1326 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 405 | 641 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed02g0627 | 1326 | FunFam | ABC transporter B family member 1 | 1050 | 1300 | - | - | |
| Sed02g0627 | 1326 | CDD | ABC_MTABC3_MDL1_MDL2 | 405 | 644 | - | - | |
| Sed02g0627 | 1326 | Pfam | ABC transporter | 423 | 572 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed02g0627 | 1326 | SUPERFAMILY | ABC transporter transmembrane region | 724 | 1046 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed02g0627 | 1326 | PANTHER | ABC TRANSPORTER B FAMILY | 52 | 670 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Sed02g0627 | 1326 | FunFam | ABC transporter B family member 1 | 395 | 645 | - | - | |
| Sed02g0627 | 1326 | Pfam | ABC transporter transmembrane region | 739 | 1007 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed02g0627 | 1326 | Pfam | ABC transporter transmembrane region | 83 | 354 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed02g0627 | 1326 | FunFam | ABC transporter B family member 1 | 68 | 403 | - | - | |
| Sed02g0627 | 1326 | Gene3D | ABC transporter type 1, transmembrane domain | 1026 | 1303 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed02g0627 | 1326 | FunFam | ABC transporter B family member 19 | 1026 | 1048 | - | - | |
| Sed02g0627 | 1326 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1051 | 1299 | IPR027417 | - | |
| Sed02g0627 | 1326 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 81 | 368 | - | - | |
| Sed02g0627 | 1326 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 737 | 1024 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed02g0627 | 1326 | FunFam | ABC transporter B family member 1 | 716 | 1025 | - | - | |
| Sed02g0627 | 1326 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 396 | 644 | IPR027417 | - | |
| Sed02g0627 | 1326 | MobiDBLite | consensus disorder prediction | 19 | 56 | - | - | |
| Sed02g0627 | 1326 | CDD | ABC_MTABC3_MDL1_MDL2 | 1060 | 1299 | - | - | |
| Sed02g0627 | 1326 | SMART | AAA_5 | 432 | 618 | IPR003593 | GO:0016887(InterPro) | |
| Sed02g0627 | 1326 | SMART | AAA_5 | 1087 | 1279 | IPR003593 | GO:0016887(InterPro) | |
| Sed02g0627 | 1326 | SUPERFAMILY | ABC transporter transmembrane region | 69 | 386 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed02g0627 | 1326 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 82 | 370 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed02g0627 | 1326 | Gene3D | ABC transporter type 1, transmembrane domain | 717 | 1025 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed02g0627 | 1326 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1060 | 1296 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed02g0627 | 1326 | Gene3D | ABC transporter type 1, transmembrane domain | 68 | 658 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g0627 | Sed-Chr2:44084880 | Sed03g0201 | Sed-Chr3:1247429 | 0.00E+00 | dispersed | |
| Sed02g0627 | Sed-Chr2:44084880 | Sed02g0628 | Sed-Chr2:44084880 | 0.00E+00 | tandem | |
| Sed05g0703 | Sed-Chr5:5252504 | Sed02g0627 | Sed-Chr2:44084880 | 6.70E-10 | transposed | |
| Sed02g0627 | Sed-Chr2:44084880 | Sed04g1380 | Sed-Chr4:28162001 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed02g0627 | K05658 | - | csv:101220974 | 2305.02 |