Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0627 ATGTCACCAGAATCTGAGGAGATAAACAGAAGCGAGCAATGGAAATGGTCGGAAATGCAAGGCCTTGAGCTCGCCTCTTCGGATCCACCAGCCCCAACCGCCAAACCCACAGACCCTGAACAAGGAACTGGGCGGCCCACAAGGGGAGAAATGGAGCCTGCAAGTGGTTCCACGAAGGACATCGCCGCCGTTGGATTTGGCGAGCTCTTCCGATTCGCCGATGGGTTGGATTGTGTTCTGATGGCAATTGGGTCGGTGGGAGCCTTGGTCCACGGCTGTTCTCTGCCTCTGTTTCTTCGATTCTTTGCTGATCTTGTTAACTCTTTCGGGTCTAATGCCAACGATGTGGATAAAATGATGCAGGAGGTTTTAAAGTACGCATTCTACTTTCTGGTGGTTGGAGCTGCGATTTGGGCATCATCCTGGGCAGAGATTTCATGTTGGATGTGGACCGGCGAGCGGCAGTCCACCAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGACATTCAGTATTTCGACACCGAGGTGCGAACCTCGGATGTCGTTTTCGCCATCAACACGGACGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATTCACTACATGGCAACTTTTGTTTCTGGATTCGTTGTGGGATTCACGGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCTGTGGTTCCTCTCATTGCAGTAATTGGTGGCATCTATGCCACCACCATAGCTAAGCTCACGGCCAAGACTCAAGAAGCTCTTTCAGATGCTGGGAATACAGTTGAACAGACAATAGTTCAAATCCGAGTTGTTCTTGCCTTTGTTGGGGAATCGAGGGCCTTGCAGAGGTACTCCTCTGCATTGAAGATTGCTCAAAAGATAGGTTACAAAAGTGGTTTCTCTAAAGGTATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGCTGTTATGCTCTTCTGCTCTGGTATGGAGGTTATCTTGTTAGACACCACGCTACCAATGGCGGTCTTGCCATTGCCACCATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGTATGAGTTCATTCGCCAAGGCTAAAGTTGCAGCTGCCAAAATCTACCGTATAATCGACCACAAGCCTACTTTAAACCGCAACAATGAATCTGGATTGGAATTGGAGTCAGTTTCAGGACTGGTTGAGCTGAAGAATGTAGATTTCTCATACCCATCAAGGCCGGATGTAAGAATCCTCAACAATTTCTCCCTAACTGTCCCAGCCGGTAAAACGATAGCTCTGGTCGGTAGCAGTGGCTCCGGAAAGAGCACGGTCGTGTCCTTAATTGAAAGATTCTATGACCCCATTTCAGGCAAAGTTCTACTCGACGGGCGTGACATCAAAACTTTGAAGCTAAGATGGTTAAGGCAGCAGATAGGGCTGGTGAGCCAAGAACCTGCTCTTTTTGCCACCACCATCAAGGAAAACATTCTCTTGGGCAGACCTGATGCAGACCAAGTTGAAGTGGAGGAAGCTGCTCGAGTAGCCAATGCTCATTCATTCATTATCAAGCTTCCTGAAGGCTATGACACCCAGGTAGGGGAAAGAGGACTGCAGCTTTCTGGGGGACAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTAAAAAACCCTGCAATTCTACTCTTAGATGAGGCGACTAGTGCTTTGGACTCGGAGTCAGAAAAGCTTGTACAGGAGGCTCTTGATCGTTTCATGATCGGGCGGACTACTCTTGTTATTGCCCATCGCCTCTCTACCATTCGCAAGGCTGACCTAGTGGCTGTACTCCAACAAGGAAGTGTCTCTGAAATAGGAACACATGACGAGCTCTTTGCGAAAGGAGAGAATGGTGTATATGCCAAACTCATCCGAATGCAGGAGATGGCACATGAAACTGCTCTCAGTAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCTCCTATAATTGCACGGAATTCATCCTATGGACGATCGCCATATTCACGTCGGTTATCTGACTTTTCCACATCTGATTTTAGTCTATCTCTGGATGCTACACTTCCCAATTATAGGCTTGAAAAACTTGCCTTTAAAGAGCAAGCTGGTTCCTTTTGGCGTCTTGTGAAAATGAATTCACCCGAATGGCTCTATGCATTACTTGGCTCTATTGGCTCTGTTGTTTGCGGGTTTTTAAGCGCCTTCTTCGCATATGTTCTAAGTGCTGTTCTCAGTGTCTACTACAACCCAGACCATGCTTTCATGAGCAGAGAAATTATTAAATACTGCTACTTACTAATTGGACTTTCATCAGCTGCTCTTCTCTTCAATACAATACAACATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTGAGAGAGAAGATGTTGACATCAGTTCTGAAAAATGAAATGGCATGGTTTGACCAGGAAGAAAATGAGAGTGCCAAGATTGCTGCAAGGCTGGCCCTGGATGCTAATAATGTCAGATCAGCTATTGGAGACAGGATTTCTGTGATTGTACAGAACTCATCACTTATGCTAGTTGCATGCACCGCCGGATTCGTTTTGCAGTGGCGCCTTTCTCTTGTCCTTGTAGCTGTCTTCCCTGTGGTTGTGGCTGCCACTGTTCTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAATTAGCCGGGGAGGCCATAGCCAATGTAAGGACAGTTGCTGCATTCAACTCAGAGGAAAAGATTGTCAGACTTTTCTCTACCAACCTTGAGATCCCACTACGGCGCTGCTTTTGGAAGGGGCAGATTGCGGGTAGTGGATTTGGCATTGCTCAGTTCTCTCTATATGCTTCCTATGCTCTAGGCCTTTGGTATGCCTCATGGCTCGTGAAGCACGGGCTCTCCGATTTTTCGAAGGCGATTCGTGTTTTCATGGTCCTTATGGTTTCTGCAAATGGTGCAGCTGAAACACTCACTCTTGCTCCTGACTTTATTAAGGGTGGGCGAGCTATGCGTTCCGTCTTTTCCCTTCTTGACCGCAAAACTGAAATTGAACCTGATGATCCAGATGCCACCCCGGTCCCGGATAAACTTCGTGGGGAAGTTGAATTTAAACATGTTGACTTTTCCTACCCTACTCGTCCTGATATCCCTGTCTTCAGGGACCTTAGTTTGCGTGCTCGAGCAGGTAAGACTCTTGCTCTTGTTGGCCCTAGTGGGTGTGGCAAGAGCTCTGTCATTGCACTAGTCCAAAGATTCTATGAGCCATCATCAGGACGGGTCATGATTGATGGAAAGGATATTCGTAAGTTCAATCTCAAGTCCCTGAGAAAGCACATAGCAATGGTCCCGCAGGAGCCATGCTTATTCGCCGCTTCCATATATGATAATATCGCTTATGGCCATGAATCAGCCACCGAAACCGAGATCATCGAAGCTGCGACTTTGGCAAATGCCCATAAGTTCATATCTGGCTTGCCAGAAGGGTATAAAACTTCTGTTGGGGAGAGAGGAGTTCAACTATCAGGTGGACAAAAACAAAGAATTGCAATTGCACGTGCTCTTATCAGGAAGGCAGAGCTTATGCTGCTAGATGAGGCAACAAGTGCACTCGATGCAGAGTCAGAGCGATCTGTCCAGGAGGCTCTCGACCGAGCTTGTTCAGGAAAAACAACAATCGTAGTTGCTCATCGGCTATCAACCATCAGGAATGCTCATGTCATTGCAGTAATCGACGACGGTAAAGTTGCCGAACAGGGATCACACTCGCATTTGTTGAAGAATTATCCTGATGGTTGTTACTCCCGGATGATACAATTACAAAGATTCACACACAGCCAAGTCATTGGAATGACTTCAGGTTCAACTTCATCAGCAAGAACAAGAGATGAGGACAAAGATAGCTAG 3981 47.35 MSPESEEINRSEQWKWSEMQGLELASSDPPAPTAKPTDPEQGTGRPTRGEMEPASGSTKDIAAVGFGELFRFADGLDCVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSNANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYATTIAKLTAKTQEALSDAGNTVEQTIVQIRVVLAFVGESRALQRYSSALKIAQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGKVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEMAHETALSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATLPNYRLEKLAFKEQAGSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTSVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNSSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGIAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFSLLDRKTEIEPDDPDATPVPDKLRGEVEFKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATETEIIEAATLANAHKFISGLPEGYKTSVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNYPDGCYSRMIQLQRFTHSQVIGMTSGSTSSARTRDEDKDS 1326
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 44084880 44091093 + Sed0013100.1 Sed02g0627 704295
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0627 1326 Pfam ABC transporter 1079 1227 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed02g0627 1326 ProSitePatterns ABC transporters family signature. 1199 1213 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed02g0627 1326 ProSitePatterns ABC transporters family signature. 544 558 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed02g0627 1326 CDD ABC_6TM_Pgp_ABCB1_D2_like 727 1042 - -
Sed02g0627 1326 Gene3D - 1049 1300 IPR027417 -
Sed02g0627 1326 Gene3D - 395 645 IPR027417 -
Sed02g0627 1326 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 405 641 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed02g0627 1326 FunFam ABC transporter B family member 1 1050 1300 - -
Sed02g0627 1326 CDD ABC_MTABC3_MDL1_MDL2 405 644 - -
Sed02g0627 1326 Pfam ABC transporter 423 572 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed02g0627 1326 SUPERFAMILY ABC transporter transmembrane region 724 1046 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed02g0627 1326 PANTHER ABC TRANSPORTER B FAMILY 52 670 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Sed02g0627 1326 FunFam ABC transporter B family member 1 395 645 - -
Sed02g0627 1326 Pfam ABC transporter transmembrane region 739 1007 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed02g0627 1326 Pfam ABC transporter transmembrane region 83 354 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed02g0627 1326 FunFam ABC transporter B family member 1 68 403 - -
Sed02g0627 1326 Gene3D ABC transporter type 1, transmembrane domain 1026 1303 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed02g0627 1326 FunFam ABC transporter B family member 19 1026 1048 - -
Sed02g0627 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1051 1299 IPR027417 -
Sed02g0627 1326 CDD ABC_6TM_Pgp_ABCB1_D1_like 81 368 - -
Sed02g0627 1326 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 737 1024 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed02g0627 1326 FunFam ABC transporter B family member 1 716 1025 - -
Sed02g0627 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 644 IPR027417 -
Sed02g0627 1326 MobiDBLite consensus disorder prediction 19 56 - -
Sed02g0627 1326 CDD ABC_MTABC3_MDL1_MDL2 1060 1299 - -
Sed02g0627 1326 SMART AAA_5 432 618 IPR003593 GO:0016887(InterPro)
Sed02g0627 1326 SMART AAA_5 1087 1279 IPR003593 GO:0016887(InterPro)
Sed02g0627 1326 SUPERFAMILY ABC transporter transmembrane region 69 386 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed02g0627 1326 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 82 370 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed02g0627 1326 Gene3D ABC transporter type 1, transmembrane domain 717 1025 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed02g0627 1326 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1060 1296 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed02g0627 1326 Gene3D ABC transporter type 1, transmembrane domain 68 658 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0627 Sed-Chr2:44084880 Sed03g0201 Sed-Chr3:1247429 0.00E+00 dispersed
Sed02g0627 Sed-Chr2:44084880 Sed02g0628 Sed-Chr2:44084880 0.00E+00 tandem
Sed05g0703 Sed-Chr5:5252504 Sed02g0627 Sed-Chr2:44084880 6.70E-10 transposed
Sed02g0627 Sed-Chr2:44084880 Sed04g1380 Sed-Chr4:28162001 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0627 K05658 - csv:101220974 2305.02