Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed02g0628 | ATGGCAACTTTTGTTTCTGGATTCGTTGTGGGATTCACGGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCTGTGGTTCCTCTCATTGCAGTAATTGGTGGCATCTATGCCACCACCATAGCTAAGCTCACGGCCAAGACTCAAGAAGCTCTTTCAGATGCTGGGAATACAGTTGAACAGACAATAGTTCAAATCCGAGTTGTTCTTGCCTTTGTTGGGGAATCGAGGGCCTTGCAGAGGTACTCCTCTGCATTGAAGATTGCTCAAAAGATAGGTTACAAAAGTGGTTTCTCTAAAGGTATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGCTGTTATGCTCTTCTGCTCTGGTATGGAGGTTATCTTGTTAGACACCACGCTACCAATGGCGGTCTTGCCATTGCCACCATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGTATGAGTTCATTCGCCAAGGCTAAAGTTGCAGCTGCCAAAATCTACCGTATAATCGACCACAAGCCTACTTTAAACCGCAACAATGAATCTGGATTGGAATTGGAGTCAGTTTCAGGACTGGTTGAGCTGAAGAATGTAGATTTCTCATACCCATCAAGGCCGGATGTAAGAATCCTCAACAATTTCTCCCTAACTGTCCCAGCCGGTAAAACGATAGCTCTGGTCGGTAGCAGTGGCTCCGGAAAGAGCACGGTCGTGTCCTTAATTGAAAGATTCTATGACCCCATTTCAGGCAAAGTTCTACTCGACGGGCGTGACATCAAAACTTTGAAGCTAAGATGGTTAAGGCAGCAGATAGGGCTGGTGAGCCAAGAACCTGCTCTTTTTGCCACCACCATCAAGGAAAACATTCTCTTGGGCAGACCTGATGCAGACCAAGTTGAAGTGGAGGAAGCTGCTCGAGTAGCCAATGCTCATTCATTCATTATCAAGCTTCCTGAAGGCTATGACACCCAGGTAGGGGAAAGAGGACTGCAGCTTTCTGGGGGACAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTAAAAAACCCTGCAATTCTACTCTTAGATGAGGCGACTAGTGCTTTGGACTCGGAGTCAGAAAAGCTTGTACAGGAGGCTCTTGATCGTTTCATGATCGGGCGGACTACTCTTGTTATTGCCCATCGCCTCTCTACCATTCGCAAGGCTGACCTAGTGGCTGTACTCCAACAAGGAAGTGTCTCTGAAATAGGAACACATGACGAGCTCTTTGCGAAAGGAGAGAATGGTGTATATGCCAAACTCATCCGAATGCAGGAGATGGCACATGAAACTGCTCTCAGTAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCTCCTATAATTGCACGGAATTCATCCTATGGACGATCGCCATATTCACGTCGGTTATCTGACTTTTCCACATCTGATTTTAGTCTATCTCTGGATGCTACACTTCCCAATTATAGGCTTGAAAAACTTGCCTTTAAAGAGCAAGCTGGTTCCTTTTGGCGTCTTGTGAAAATGAATTCACCCGAATGGCTCTATGCATTACTTGGCTCTATTGGCTCTGTTGTTTGCGGGTTTTTAAGCGCCTTCTTCGCATATGTTCTAAGTGCTGTTCTCAGTGTCTACTACAACCCAGACCATGCTTTCATGAGCAGAGAAATTATTAAATACTGCTACTTACTAATTGGACTTTCATCAGCTGCTCTTCTCTTCAATACAATACAACATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTGAGAGAGAAGATGTTGACATCAGTTCTGAAAAATGAAATGGCATGGTTTGACCAGGAAGAAAATGAGAGTGCCAAGATTGCTGCAAGGCTGGCCCTGGATGCTAATAATGTCAGATCAGCTATTGGAGACAGGATTTCTGTGATTGTACAGAACTCATCACTTATGCTAGTTGCATGCACCGCCGGATTCGTTTTGCAGTGGCGCCTTTCTCTTGTCCTTGTAGCTGTCTTCCCTGTGGTTGTGGCTGCCACTGTTCTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAATTAGCCGGGGAGGCCATAGCCAATGTAAGGACAGTTGCTGCATTCAACTCAGAGGAAAAGATTGTCAGACTTTTCTCTACCAACCTTGAGATCCCACTACGGCGCTGCTTTTGGAAGGGGCAGATTGCGGGTAGTGGATTTGGCATTGCTCAGTTCTCTCTATATGCTTCCTATGCTCTAGGCCTTTGGTATGCCTCATGGCTCGTGAAGCACGGGCTCTCCGATTTTTCGAAGGCGATTCGTGTTTTCATGGTCCTTATGGTTTCTGCAAATGGTGCAGCTGAAACACTCACTCTTGCTCCTGACTTTATTAAGGGTGGGCGAGCTATGCGTTCCGTCTTTTCCCTTCTTGACCGCAAAACTGAAATTGAACCTGATGATCCAGATGCCACCCCGGTCCCGGATAAACTTCGTGGGGAAGTTGAATTTAAACATGTTGACTTTTCCTACCCTACTCGTCCTGATATCCCTGTCTTCAGGGACCTTAGTTTGCGTGCTCGAGCAGGTAAGACTCTTGCTCTTGTTGGCCCTAGTGGGTGTGGCAAGAGCTCTGTCATTGCACTAGTCCAAAGATTCTATGAGCCATCATCAGGACGGGTCATGATTGATGGAAAGGATATTCGTAAGTTCAATCTCAAGTCCCTGAGAAAGCACATAGCAATGGTCCCGCAGGAGCCATGCTTATTCGCCGCTTCCATATATGATAATATCGCTTATGGCCATGAATCAGCCACCGAAACCGAGATCATCGAAGCTGCGACTTTGGCAAATGCCCATAAGTTCATATCTGGCTTGCCAGAAGGGTATAAAACTTCTGTTGGGGAGAGAGGAGTTCAACTATCAGGTGGACAAAAACAAAGAATTGCAATTGCACGTGCTCTTATCAGGAAGGCAGAGCTTATGCTGCTAGATGAGGCAACAAGTGCACTCGATGCAGAGTCAGAGCGATCTGTCCAGGAGGCTCTCGACCGAGCTTGTTCAGGAAAAACAACAATCGTAGTTGCTCATCGGCTATCAACCATCAGGAATGCTCATGTCATTGCAGTAATCGACGACGGTAAAGTTGCCGAACAGGGATCACACTCGCATTTGTTGAAGAATTATCCTGATGGTTGTTACTCCCGGATGATACAATTACAAAGATTCACACACAGCCAAGTCATTGGAATGACTTCAGGTTCAACTTCATCAGCAAGAACAAGAGATGAGGACAAAGATAGCTAG | 3354 | 46.39 | MATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYATTIAKLTAKTQEALSDAGNTVEQTIVQIRVVLAFVGESRALQRYSSALKIAQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGKVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEMAHETALSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATLPNYRLEKLAFKEQAGSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTSVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNSSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGIAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFSLLDRKTEIEPDDPDATPVPDKLRGEVEFKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATETEIIEAATLANAHKFISGLPEGYKTSVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNYPDGCYSRMIQLQRFTHSQVIGMTSGSTSSARTRDEDKDS | 1117 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 44084880 | 44091093 | + | Sed0013100.2 | Sed02g0628 | 704296 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed02g0628 | 1117 | Pfam | ABC transporter | 214 | 363 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed02g0628 | 1117 | Gene3D | ABC transporter type 1, transmembrane domain | 1 | 449 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed02g0628 | 1117 | Pfam | ABC transporter transmembrane region | 1 | 145 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed02g0628 | 1117 | Pfam | ABC transporter transmembrane region | 530 | 798 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed02g0628 | 1117 | Gene3D | ABC transporter type 1, transmembrane domain | 508 | 816 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed02g0628 | 1117 | SUPERFAMILY | ABC transporter transmembrane region | 2 | 177 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed02g0628 | 1117 | PANTHER | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL | 505 | 1091 | IPR039421 | GO:0015421(PANTHER) | |
| Sed02g0628 | 1117 | FunFam | ABC transporter B family member 1 | 507 | 816 | - | - | |
| Sed02g0628 | 1117 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 842 | 1090 | IPR027417 | - | |
| Sed02g0628 | 1117 | FunFam | ABC transporter B family member 1 | 186 | 436 | - | - | |
| Sed02g0628 | 1117 | Pfam | ABC transporter | 870 | 1018 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed02g0628 | 1117 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 196 | 432 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed02g0628 | 1117 | SMART | AAA_5 | 223 | 409 | IPR003593 | GO:0016887(InterPro) | |
| Sed02g0628 | 1117 | SMART | AAA_5 | 878 | 1070 | IPR003593 | GO:0016887(InterPro) | |
| Sed02g0628 | 1117 | FunFam | ABC transporter B family member 1 | 841 | 1091 | - | - | |
| Sed02g0628 | 1117 | FunFam | ABC transporter B family member 19 | 817 | 839 | - | - | |
| Sed02g0628 | 1117 | CDD | ABC_MTABC3_MDL1_MDL2 | 196 | 435 | - | - | |
| Sed02g0628 | 1117 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 518 | 833 | - | - | |
| Sed02g0628 | 1117 | ProSitePatterns | ABC transporters family signature. | 335 | 349 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed02g0628 | 1117 | SUPERFAMILY | ABC transporter transmembrane region | 515 | 837 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed02g0628 | 1117 | Gene3D | ABC transporter type 1, transmembrane domain | 817 | 1094 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed02g0628 | 1117 | Gene3D | - | 186 | 436 | IPR027417 | - | |
| Sed02g0628 | 1117 | Gene3D | - | 840 | 1091 | IPR027417 | - | |
| Sed02g0628 | 1117 | ProSitePatterns | ABC transporters family signature. | 990 | 1004 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed02g0628 | 1117 | CDD | ABC_MTABC3_MDL1_MDL2 | 851 | 1090 | - | - | |
| Sed02g0628 | 1117 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 528 | 815 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed02g0628 | 1117 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 851 | 1087 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed02g0628 | 1117 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 187 | 435 | IPR027417 | - | |
| Sed02g0628 | 1117 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 1 | 161 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed02g0628 | 1117 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 1 | 159 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g0628 | Sed-Chr2:44084880 | Sed04g1380 | Sed-Chr4:28162001 | 0.00E+00 | dispersed | |
| Sed02g0627 | Sed-Chr2:44084880 | Sed02g0628 | Sed-Chr2:44084880 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed02g0628 | K05658 | - | csv:101220974 | 1984.53 |