Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0654 ATGGCGAACAATGACATCGAAATCGGGGGGGCGGAGGCGGAGGCGGGGGCGACGAAGGACTATTTCGAGCCGAAGCCGGCCCCGATATTCGACGCGGAGGAGTTCGAGAAATGGTCGTTTTACAGAGCTATAATTGCTGAGTTTATGGCGACGCTGTTGTTTCTGTACGTCTCCATTTTGGCGGTCATCGGAAATAGTAGCAACACGGATCCGTTCACCGGCGGCCATAAATGCGGCGGAATTGGCCCTGTCGGAATCTCTTGGGTTTTCGGCGGTATGATCCTCGTCCTTGTCTACTGCACGGCCGGTATTTCTGGAGGGCACATAAATCCAGCAGTGACATTCGGAATGCTTTTGGCAAGAAAGATAACGTTGGTGCGTGCGTTGCTCTACATTATAGCCCAATGCGTAGGGGCGATTTGCGGCTGTGCCTTGGTCAAGACACTCGACAAAGATCTCTACAACCACTACGGTGGCGCCGCCAACAGACTCGTTGACGGCTACAGCAGAAGCACCGGCCTCGCTGTCGAGATCGTCGGCACCTTCGTCCTTCTCTACACCGTCTTCTCTGCCACCGATCCTAAACGCAATGCCCGAGATTCCCATGTTCCCGTCCTGGCTCCGCTCCCCATTGGCTTCGCTGTCTTCGTGGTTCACCTTGCTACCATCCCGGTCACTGGCACTGGCATCAACCCGGCTCGGAGCTTTGGCGCTGCTGTGATCATTAACGATAAAAAAGTTTGGAACGACCTTTGGATATTTTGGGCGGGGCCGTTGATCGGAGCCACCATTGCCGCCGTGTATTATCAGCATATTCTTCGAGGCTCCGCCGTGAAAGCAATCGGATCTTTTAGAGCCTCCACAAGACCCAGATCTTAG 879 54.49 MANNDIEIGGAEAEAGATKDYFEPKPAPIFDAEEFEKWSFYRAIIAEFMATLLFLYVSILAVIGNSSNTDPFTGGHKCGGIGPVGISWVFGGMILVLVYCTAGISGGHINPAVTFGMLLARKITLVRALLYIIAQCVGAICGCALVKTLDKDLYNHYGGAANRLVDGYSRSTGLAVEIVGTFVLLYTVFSATDPKRNARDSHVPVLAPLPIGFAVFVVHLATIPVTGTGINPARSFGAAVIINDKKVWNDLWIFWAGPLIGATIAAVYYQHILRGSAVKAIGSFRASTRPRS 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44341508 44344758 + Sed0017045.1 Sed02g0654 704322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0654 292 CDD MIP 42 272 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0654 292 Gene3D Glycerol uptake facilitator protein. 27 290 IPR023271 -
Sed02g0654 292 PRINTS Major intrinsic protein family signature 252 272 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0654 292 PRINTS Major intrinsic protein family signature 212 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0654 292 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0654 292 PRINTS Major intrinsic protein family signature 90 114 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0654 292 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0654 292 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0654 292 FunFam Probable aquaporin PIP1-2 27 288 - -
Sed02g0654 292 SUPERFAMILY Aquaporin-like 34 274 IPR023271 -
Sed02g0654 292 Pfam Major intrinsic protein 34 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0654 292 NCBIfam MIP family channel protein 46 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g0654 292 ProSitePatterns MIP family signature. 108 116 IPR022357 -
Sed02g0654 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 284 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0654 Sed-Chr2:44341508 Sed14g0415 Sed-Chr14:4313852 1.00E-118 dispersed
Sed14g0413 Sed-Chr14:4282412 Sed02g0654 Sed-Chr2:44341508 2.70E-108 wgd
Sed02g0654 Sed-Chr2:44341508 Sed03g2005 Sed-Chr3:13940345 1.50E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0654 K09872 - csv:101214142 471.855