Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0654 | ATGGCGAACAATGACATCGAAATCGGGGGGGCGGAGGCGGAGGCGGGGGCGACGAAGGACTATTTCGAGCCGAAGCCGGCCCCGATATTCGACGCGGAGGAGTTCGAGAAATGGTCGTTTTACAGAGCTATAATTGCTGAGTTTATGGCGACGCTGTTGTTTCTGTACGTCTCCATTTTGGCGGTCATCGGAAATAGTAGCAACACGGATCCGTTCACCGGCGGCCATAAATGCGGCGGAATTGGCCCTGTCGGAATCTCTTGGGTTTTCGGCGGTATGATCCTCGTCCTTGTCTACTGCACGGCCGGTATTTCTGGAGGGCACATAAATCCAGCAGTGACATTCGGAATGCTTTTGGCAAGAAAGATAACGTTGGTGCGTGCGTTGCTCTACATTATAGCCCAATGCGTAGGGGCGATTTGCGGCTGTGCCTTGGTCAAGACACTCGACAAAGATCTCTACAACCACTACGGTGGCGCCGCCAACAGACTCGTTGACGGCTACAGCAGAAGCACCGGCCTCGCTGTCGAGATCGTCGGCACCTTCGTCCTTCTCTACACCGTCTTCTCTGCCACCGATCCTAAACGCAATGCCCGAGATTCCCATGTTCCCGTCCTGGCTCCGCTCCCCATTGGCTTCGCTGTCTTCGTGGTTCACCTTGCTACCATCCCGGTCACTGGCACTGGCATCAACCCGGCTCGGAGCTTTGGCGCTGCTGTGATCATTAACGATAAAAAAGTTTGGAACGACCTTTGGATATTTTGGGCGGGGCCGTTGATCGGAGCCACCATTGCCGCCGTGTATTATCAGCATATTCTTCGAGGCTCCGCCGTGAAAGCAATCGGATCTTTTAGAGCCTCCACAAGACCCAGATCTTAG | 879 | 54.49 | MANNDIEIGGAEAEAGATKDYFEPKPAPIFDAEEFEKWSFYRAIIAEFMATLLFLYVSILAVIGNSSNTDPFTGGHKCGGIGPVGISWVFGGMILVLVYCTAGISGGHINPAVTFGMLLARKITLVRALLYIIAQCVGAICGCALVKTLDKDLYNHYGGAANRLVDGYSRSTGLAVEIVGTFVLLYTVFSATDPKRNARDSHVPVLAPLPIGFAVFVVHLATIPVTGTGINPARSFGAAVIINDKKVWNDLWIFWAGPLIGATIAAVYYQHILRGSAVKAIGSFRASTRPRS | 292 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 44341508 | 44344758 | + | Sed0017045.1 | Sed02g0654 | 704322 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0654 | 292 | CDD | MIP | 42 | 272 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed02g0654 | 292 | Gene3D | Glycerol uptake facilitator protein. | 27 | 290 | IPR023271 | - | |
Sed02g0654 | 292 | PRINTS | Major intrinsic protein family signature | 252 | 272 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed02g0654 | 292 | PRINTS | Major intrinsic protein family signature | 212 | 234 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed02g0654 | 292 | PRINTS | Major intrinsic protein family signature | 42 | 61 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed02g0654 | 292 | PRINTS | Major intrinsic protein family signature | 90 | 114 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed02g0654 | 292 | PRINTS | Major intrinsic protein family signature | 176 | 194 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed02g0654 | 292 | PRINTS | Major intrinsic protein family signature | 127 | 146 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed02g0654 | 292 | FunFam | Probable aquaporin PIP1-2 | 27 | 288 | - | - | |
Sed02g0654 | 292 | SUPERFAMILY | Aquaporin-like | 34 | 274 | IPR023271 | - | |
Sed02g0654 | 292 | Pfam | Major intrinsic protein | 34 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed02g0654 | 292 | NCBIfam | MIP family channel protein | 46 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed02g0654 | 292 | ProSitePatterns | MIP family signature. | 108 | 116 | IPR022357 | - | |
Sed02g0654 | 292 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 13 | 284 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0654 | Sed-Chr2:44341508 | Sed14g0415 | Sed-Chr14:4313852 | 1.00E-118 | dispersed | |
Sed14g0413 | Sed-Chr14:4282412 | Sed02g0654 | Sed-Chr2:44341508 | 2.70E-108 | wgd | |
Sed02g0654 | Sed-Chr2:44341508 | Sed03g2005 | Sed-Chr3:13940345 | 1.50E-117 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0654 | K09872 | - | csv:101214142 | 471.855 |