Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0658 ATGGGTAACATTGGGAGTAGCGGTTCCAATAATCGGAGAAGACACGGCAGCCACCGTAACCATCCCGCTCCGCCGCCACCGCAGCCTGAGATCACAAGCAATCGCTACGTTTTCGCCGCCGCCACGCCCTACCCATCACAATACCCTAACCATTCGAATCAGGCGCCGCCGCCGCCGCCGTACTACCAGTACCCCGGTTACTTCCCGCCGCCGCCGCCTGGTCCGCCGCCGTCGATGCCGATGCCCTTGTCGCCGCCTATCGACCACCACCCCCACCACCGCGCCGGCCACCCCCACATGGACCCTGCCGCGCATTGGGTCGGCGGTAGATATCCTTATGGGCCTCCTATGTTGCTCCAAACGCCCTATGTCGAGCACCAGAAGGCTGTTACCATTCGAAATGATGTCAATCTCAAGAAGGAAACTCTTAGGGTTGAGCCTGATGAGGATAACCCCGGCCAGTTCCTTGTTTCTTTCACCTTTGATGCCACTGTTGCTGGGAGTATCACCATCTTCTTCTTCGCAAAAGAAGGTGAAGATTGCAACTTGACACCTGTAAAAGAAGACACTTTTCAACCAGTAACTGTCCATTTCGAACAAGGCCTTGGACAGAAGTTCAGACAACCCTCTGGAACAGGAATAGATTTTTCAAAGTTGGAAGAGTCAGAATTACTGAAGGTAAATGACACCCATGTGTACCCGTTAGCTGTAAAAGCTGAGGCTTCTACTAACTGCCAAACCGGCCCAGATGGTACCATGGTACCTGAGACCATGAATTCCCAGATAACCCAGGCCGTGTTCGAGAAAGATAAAGGTGAATATCAGGTAAGAGTGCTGAAACAAATCCTGTGGGTCAATGGTATGAGATATGAGCTTCAGGAGATCTATGGAATTGGCAATTCAGCCGAGGGCGATGTGGATGAAAATGACCCTGGAAAGGAATGTGTCATTTGCTTGTCAGAACCACGGGATACGACTGTCCTTCCCTGCCGACACATGTGCATGTGTAGTGGCTGTGCTAAGGTGCTGAGGTTCCAGACGAATCGATGCCCGATTTGCAGACAACCTGTCGATAGGCTCTTAGAGATAAGGGTCAGCAATGGGCCAGAAGGGTCAGAAGAATAG 1125 52.27 MGNIGSSGSNNRRRHGSHRNHPAPPPPQPEITSNRYVFAAATPYPSQYPNHSNQAPPPPPYYQYPGYFPPPPPGPPPSMPMPLSPPIDHHPHHRAGHPHMDPAAHWVGGRYPYGPPMLLQTPYVEHQKAVTIRNDVNLKKETLRVEPDEDNPGQFLVSFTFDATVAGSITIFFFAKEGEDCNLTPVKEDTFQPVTVHFEQGLGQKFRQPSGTGIDFSKLEESELLKVNDTHVYPLAVKAEASTNCQTGPDGTMVPETMNSQITQAVFEKDKGEYQVRVLKQILWVNGMRYELQEIYGIGNSAEGDVDENDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVSNGPEGSEE 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44360718 44364952 + Sed0002575.1 Sed02g0658 704326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0658 374 CDD mRING-HC-C3HC5_MGRN1-like 313 354 IPR045195 -
Sed02g0658 374 SUPERFAMILY RING/U-box 314 360 - -
Sed02g0658 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 364 IPR013083 -
Sed02g0658 374 MobiDBLite consensus disorder prediction 1 96 - -
Sed02g0658 374 ProSiteProfiles Zinc finger RING-type profile. 315 354 IPR001841 -
Sed02g0658 374 FunFam probable E3 ubiquitin-protein ligase LOG2 299 364 - -
Sed02g0658 374 Pfam Zinc finger, C3HC4 type (RING finger) 313 359 - -
Sed02g0658 374 SMART ring_2 315 353 IPR001841 -
Sed02g0658 374 MobiDBLite consensus disorder prediction 50 86 - -
Sed02g0658 374 PANTHER MAHOGUNIN 1 368 IPR045194 GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0658 Sed-Chr2:44360718 Sed02g1274 Sed-Chr2:49424173 1.10E-72 dispersed
Sed02g0658 Sed-Chr2:44360718 Sed04g1357 Sed-Chr4:27884137 5.40E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0658 K27504 - csv:101216150 605.52