Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0658 | ATGGGTAACATTGGGAGTAGCGGTTCCAATAATCGGAGAAGACACGGCAGCCACCGTAACCATCCCGCTCCGCCGCCACCGCAGCCTGAGATCACAAGCAATCGCTACGTTTTCGCCGCCGCCACGCCCTACCCATCACAATACCCTAACCATTCGAATCAGGCGCCGCCGCCGCCGCCGTACTACCAGTACCCCGGTTACTTCCCGCCGCCGCCGCCTGGTCCGCCGCCGTCGATGCCGATGCCCTTGTCGCCGCCTATCGACCACCACCCCCACCACCGCGCCGGCCACCCCCACATGGACCCTGCCGCGCATTGGGTCGGCGGTAGATATCCTTATGGGCCTCCTATGTTGCTCCAAACGCCCTATGTCGAGCACCAGAAGGCTGTTACCATTCGAAATGATGTCAATCTCAAGAAGGAAACTCTTAGGGTTGAGCCTGATGAGGATAACCCCGGCCAGTTCCTTGTTTCTTTCACCTTTGATGCCACTGTTGCTGGGAGTATCACCATCTTCTTCTTCGCAAAAGAAGGTGAAGATTGCAACTTGACACCTGTAAAAGAAGACACTTTTCAACCAGTAACTGTCCATTTCGAACAAGGCCTTGGACAGAAGTTCAGACAACCCTCTGGAACAGGAATAGATTTTTCAAAGTTGGAAGAGTCAGAATTACTGAAGGTAAATGACACCCATGTGTACCCGTTAGCTGTAAAAGCTGAGGCTTCTACTAACTGCCAAACCGGCCCAGATGGTACCATGGTACCTGAGACCATGAATTCCCAGATAACCCAGGCCGTGTTCGAGAAAGATAAAGGTGAATATCAGGTAAGAGTGCTGAAACAAATCCTGTGGGTCAATGGTATGAGATATGAGCTTCAGGAGATCTATGGAATTGGCAATTCAGCCGAGGGCGATGTGGATGAAAATGACCCTGGAAAGGAATGTGTCATTTGCTTGTCAGAACCACGGGATACGACTGTCCTTCCCTGCCGACACATGTGCATGTGTAGTGGCTGTGCTAAGGTGCTGAGGTTCCAGACGAATCGATGCCCGATTTGCAGACAACCTGTCGATAGGCTCTTAGAGATAAGGGTCAGCAATGGGCCAGAAGGGTCAGAAGAATAG | 1125 | 52.27 | MGNIGSSGSNNRRRHGSHRNHPAPPPPQPEITSNRYVFAAATPYPSQYPNHSNQAPPPPPYYQYPGYFPPPPPGPPPSMPMPLSPPIDHHPHHRAGHPHMDPAAHWVGGRYPYGPPMLLQTPYVEHQKAVTIRNDVNLKKETLRVEPDEDNPGQFLVSFTFDATVAGSITIFFFAKEGEDCNLTPVKEDTFQPVTVHFEQGLGQKFRQPSGTGIDFSKLEESELLKVNDTHVYPLAVKAEASTNCQTGPDGTMVPETMNSQITQAVFEKDKGEYQVRVLKQILWVNGMRYELQEIYGIGNSAEGDVDENDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVSNGPEGSEE | 374 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 44360718 | 44364952 | + | Sed0002575.1 | Sed02g0658 | 704326 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0658 | 374 | CDD | mRING-HC-C3HC5_MGRN1-like | 313 | 354 | IPR045195 | - | |
Sed02g0658 | 374 | SUPERFAMILY | RING/U-box | 314 | 360 | - | - | |
Sed02g0658 | 374 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 299 | 364 | IPR013083 | - | |
Sed02g0658 | 374 | MobiDBLite | consensus disorder prediction | 1 | 96 | - | - | |
Sed02g0658 | 374 | ProSiteProfiles | Zinc finger RING-type profile. | 315 | 354 | IPR001841 | - | |
Sed02g0658 | 374 | FunFam | probable E3 ubiquitin-protein ligase LOG2 | 299 | 364 | - | - | |
Sed02g0658 | 374 | Pfam | Zinc finger, C3HC4 type (RING finger) | 313 | 359 | - | - | |
Sed02g0658 | 374 | SMART | ring_2 | 315 | 353 | IPR001841 | - | |
Sed02g0658 | 374 | MobiDBLite | consensus disorder prediction | 50 | 86 | - | - | |
Sed02g0658 | 374 | PANTHER | MAHOGUNIN | 1 | 368 | IPR045194 | GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0658 | Sed-Chr2:44360718 | Sed02g1274 | Sed-Chr2:49424173 | 1.10E-72 | dispersed | |
Sed02g0658 | Sed-Chr2:44360718 | Sed04g1357 | Sed-Chr4:27884137 | 5.40E-152 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0658 | K27504 | - | csv:101216150 | 605.52 |