Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0660 ATGTCAAGTAATCATTTTTCTCTTCTCTCTTCCACTATCACTGGCTTTGCTCCACACCAAGATGCTAACCCTATCCCTAACCCTAATCCGAAACCCTCCGCTGCCGCGAAGAAGAAGAGAAACCTCCCCGGAAACCCAGATCCTGATGCGGATGTTATTGCTTTGTCTCCAAAATCGCTCATGGCGACGAATCGATTCATATGCGAAATTTGCAACAAGGGGTTTCAGAGAGAGCAGAATCTTCAACTTCACCGACGAGGGCATAACCTACCGTGGAAGCTGCGACAACGGACGAACAAGGATGTGATCAAGAAGAAGGTGTATATTTGTCCGGAGAAGACATGCGTCCACCACGATCCGTCACGAGCCCTCGGTGATCTGACCGGAATAAAGAAACATTTTAGCCGAAAACACGGTGAAAAGAAATGGAAATGCGACAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAAACTTGTGGGACTAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGACAGCTTCATAACTCATAGAGCATTTTGTGATGCCTTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCAACAAATATTCTCAATAATCTCAGAAATGATTCAATTCTTCTCCATCAACAAAATCCACAACAATCTTTGATTGATCATCAACAAAACAATCTCCAATCTCTTGGAGATGTTTCTGGGCTTTCCCAATTCAACCATTCAGATCATTTTCTGAGAGATTTTGAAGATCAACAACAAAAAAACAGATCTCCATTGTCACTTTGGTTGAACCAAGCCTCTAATGAAAATGCAATAAACAACAACAATAACAGCAATAATTTTTCCAACTTATTTGGAGCTTCCACTTCTTCCAATCTTTACGGATCGATAACCGAAAGTGGGCCGCTTTCTATTTTGCCGATCATTGAGAAGGAAGATGTTGAGAATAAGGGAAGTTTGTCGAAAGCTACGGCAGCGGCACTGCTGTCGGGTCAATCTTCTCAGTCTGTTGTTTCTTCTTCTCCGATGTCGGCCACTGCCCTTCTGCAAAAGGCTGCTCTTATGGGCTCAACTAGAAGCAGCAACAACAACAACTCTTCGCTCTTCGAAGCAGGCGGTTTTGGAGTAATGAGCTCTTCGTCTTTGTCGTCCTCTTCGTCTTCGAATGCAATGAGCTTGAACACTCTTAATACATCTAGAAGCTTGACGATGCCTGATCACTCAGTGCAAATGGTGGGTAGCAGTTCTGACTTGAGCTCGAATTGTCTCAGCCAACTTCTCCTACCACCAAATGGTAACAATGGAGTAAGAAGCAGCGGTCAAACACGAGACTTTCTCGGCGTCGGAGGAGGTGAAGCACCTCGGCCACCGTTCTTTCCACCGGAGCTAGCGAAATTCACAACCATAAACTCAGCAATGGGACTAAGCCAGTTCGCAGCCAACCACTAA 1482 44.06 MSSNHFSLLSSTITGFAPHQDANPIPNPNPKPSAAAKKKRNLPGNPDPDADVIALSPKSLMATNRFICEICNKGFQREQNLQLHRRGHNLPWKLRQRTNKDVIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSILLHQQNPQQSLIDHQQNNLQSLGDVSGLSQFNHSDHFLRDFEDQQQKNRSPLSLWLNQASNENAINNNNNSNNFSNLFGASTSSNLYGSITESGPLSILPIIEKEDVENKGSLSKATAAALLSGQSSQSVVSSSPMSATALLQKAALMGSTRSSNNNNSSLFEAGGFGVMSSSSLSSSSSSNAMSLNTLNTSRSLTMPDHSVQMVGSSSDLSSNCLSQLLLPPNGNNGVRSSGQTRDFLGVGGGEAPRPPFFPPELAKFTTINSAMGLSQFAANH 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44399017 44402749 - Sed0012363.1 Sed02g0660 704328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0660 493 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Sed02g0660 493 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Sed02g0660 493 FunFam protein indeterminate-domain 12-like 45 114 - -
Sed02g0660 493 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 169 208 - -
Sed02g0660 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Sed02g0660 493 Gene3D Classic Zinc Finger 121 200 - -
Sed02g0660 493 SMART c2h2final6 143 163 IPR013087 -
Sed02g0660 493 SMART c2h2final6 108 138 IPR013087 -
Sed02g0660 493 SMART c2h2final6 66 88 IPR013087 -
Sed02g0660 493 MobiDBLite consensus disorder prediction 17 50 - -
Sed02g0660 493 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Sed02g0660 493 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 104 138 - -
Sed02g0660 493 Gene3D Classic Zinc Finger 45 119 - -
Sed02g0660 493 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 142 166 - -
Sed02g0660 493 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 462 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed02g0660 493 Pfam Zinc-finger of C2H2 type 66 88 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0660 Sed-Chr2:44399017 Sed04g1349 Sed-Chr4:27859027 3.10E-171 dispersed
Sed02g0660 Sed-Chr2:44399017 Sed03g1998 Sed-Chr3:13885629 1.50E-88 wgd
Sed02g0660 Sed-Chr2:44399017 Sed04g1348 Sed-Chr4:27859027 3.10E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37548 PF12171 zf-C2H2_jaz 2.50E-05 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0660 K25870 - csv:101213422 704.131