Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0668 ATGGCCCATTTCCATTTCCTCTGTTTCCTCTGTTTCCTCTTCCTCGCCGGCCCCGCCGCATCTCAGCCGCTCTTCTTCGCCGGATTCAACAACCCCGCCGCCGCCGCCAACATATCCCTCACCGACATGGCCAAGATCGAGCCGAACGGAATCCTAAAGCTCACAAACCACACCAGCAGATTGCAGGGCCACGCCTTCTTCACGTCCCCTGTTCGCTTCAAAAACTCCTCCGCCGGCGGAGCCTTCTCCTTCTCCACCGCCTTCGCCGTCGCCGTCGTGCCGGAGTACCCGACCCTCGGCGGCCACGGCCTCGCCTTCACTATCGCACCCTCCAAAGCCCTTCACGGCCTTCCCAGCCAGTATCTCGGCCTTCTCAACGCCTCCGACCTCGGAAACTTCTCCAACCACATCTTCGCCGTCGAGTTCGACACCGTTCAGGATTTCGAGTTCGGCGACATCAACGACAACCACATCGGAATCAATCTCAACAATATGGTCTCTAATGCTTCAACAACAGCTTCCTATTTCGTCGACGAAAACAAATCCATTAAGCAAAACCTAACGCTAAAGGGTGGGAAATCCGTTCAAGCTTGGATCGATTACGATTCCTCTGTAACCACCATCTCTGTTTTTCTTTCTCCATTTTCGACCAAACCCAAGATCCCAATTCTCTCGTTTCGTGTAGATTTGTCCCCAATTTTTCACGAGTTTATGTACGTCGGGTTCTCGGCCTCGACTGGGCTTCTTGCGAGTTCTCACTATGTGTTGGGATGGAGTTTCAGTATGAACGGACCGGCCCAGTCTCTGGATCTGTCGTCTCTGCCCGCCGTGCCCGGTCCGAAGAAGAAACACACCGGTATGATAATTGGGGTTTCTGCTTCTACTGTTCTGATCATTGTAATTGCGATTTGTGTTGCTTTGTTCATCATTTGGAAGATTAGAAATGCTGACATTGTTGAAGCTTGGGAGCTTGAAATTGGGCCTCATCGGTATTCTTACAAGGAGCTTAAGAAAGCGACGAAGCGATTTAGGGATAAGGAGCTGTTGGGGCGGGGTGGATTTGGGAAGGTTTATAAAGGGATTTTGCCGAATTCAAAAACGCTTGTGGCTGTTAAGAGGATTTCTCATGAATCGAAACAGGGGTTGAGGGAATTTGTGTCGGAAATTGCTAGCATTGGTCGACTTCGTCACCGGAACTTAGTTCAGTTATTGGGATGGTGTCGTCGCCGTGGCGATTTGCTTCTTGTGTATGATTATATGGCGAACGGAAGCTTGGATTCCTACATTTTCGATGAGCCGGATGTGGTCTTGAGTTGGGATCAGAGGTTTTGGATCATAAAGGGTGTTGCCTCCGGCCTTCTTTACTTGCACGAAGGCTACGAACAGGTTGTTCTTCATAGAGATGTGAAGGCCAGTAATGTTCTGCTGGACAGTGAGATGAACGGGAAGCTTGGCGATTTTGGCCTTGCTCGGCTATACGAGCATGGAGCAAACCCTAGCACGACTCGAGTAGTCGGAACACTGGGATATCTAGCACCAGAGCTACCTAGAACAGGGAAAGCCACCACAAGCTCAGATGTATATGCCTTCGGCGCACTTCTGCTCGAAGTAGCCTGCGGGAGGCGGCCGATCGACCCAAAAGCATCGGCCGAGGAGCTGGTGCTGGTGGATTGGGTGTGGGACAAGTACCAGGGAGGGAAATTAATGGAAGTAATGGATCCAAAATTGAAAGGGAAGTTGAATGTGGTTGAGGCCGAGATGATTGTGAAGCTGGGGTTGTTCTGCTCGAACGACACAGCAGCAGCTCGGCCAAGTATGAGGCAGGTGGTGCGGTTTTTAGAGGGTGAAATCGTAGTACCGGAGGAGATATCGGCACCGAAAGTGGTGGAAGGGAGGAAGAACGGGGTAGGGTTCGATGACTTTGTGAATTCTTTTGCTTCGTCATCGTTTAATAAGTACAGCACTAATTCGTCGACTGGAATTAGGGATATGGATATGAGTTTTGCTTCATTTTCCACTTCTCCTCTTTCTCTTATCAATGGCAGAGACTAA 2052 50.44 MAHFHFLCFLCFLFLAGPAASQPLFFAGFNNPAAAANISLTDMAKIEPNGILKLTNHTSRLQGHAFFTSPVRFKNSSAGGAFSFSTAFAVAVVPEYPTLGGHGLAFTIAPSKALHGLPSQYLGLLNASDLGNFSNHIFAVEFDTVQDFEFGDINDNHIGINLNNMVSNASTTASYFVDENKSIKQNLTLKGGKSVQAWIDYDSSVTTISVFLSPFSTKPKIPILSFRVDLSPIFHEFMYVGFSASTGLLASSHYVLGWSFSMNGPAQSLDLSSLPAVPGPKKKHTGMIIGVSASTVLIIVIAICVALFIIWKIRNADIVEAWELEIGPHRYSYKELKKATKRFRDKELLGRGGFGKVYKGILPNSKTLVAVKRISHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDYMANGSLDSYIFDEPDVVLSWDQRFWIIKGVASGLLYLHEGYEQVVLHRDVKASNVLLDSEMNGKLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVYAFGALLLEVACGRRPIDPKASAEELVLVDWVWDKYQGGKLMEVMDPKLKGKLNVVEAEMIVKLGLFCSNDTAAARPSMRQVVRFLEGEIVVPEEISAPKVVEGRKNGVGFDDFVNSFASSSFNKYSTNSSTGIRDMDMSFASFSTSPLSLINGRD 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44514857 44517769 + Sed0001598.1 Sed02g0668 704336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0668 683 SMART serkin_6 343 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0668 683 CDD lectin_legume_LecRK_Arcelin_ConA 26 264 IPR001220 GO:0030246(InterPro)
Sed02g0668 683 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524(InterPro)
Sed02g0668 683 CDD STKc_IRAK 349 615 - -
Sed02g0668 683 Pfam Legume lectin domain 26 274 IPR001220 GO:0030246(InterPro)
Sed02g0668 683 ProSiteProfiles Protein kinase domain profile. 343 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0668 683 Pfam Protein kinase domain 344 550 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0668 683 FunFam L-type lectin-domain containing receptor kinase S.4 420 626 - -
Sed02g0668 683 FunFam L-type lectin-domain containing receptor kinase S.1 328 419 - -
Sed02g0668 683 Gene3D - 25 272 - -
Sed02g0668 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0668 683 Gene3D Transferase(Phosphotransferase) domain 1 420 629 - -
Sed02g0668 683 PANTHER - 40 633 IPR050528 GO:0005886(PANTHER)
Sed02g0668 683 FunFam L-type lectin-domain containing receptor kinase S.4 20 268 - -
Sed02g0668 683 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
Sed02g0668 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 282 IPR013320 -
Sed02g0668 683 SUPERFAMILY Protein kinase-like (PK-like) 325 634 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0668 Sed-Chr2:44514857 Sed04g1243 Sed-Chr4:26168213 0.00E+00 dispersed
Sed04g2059 Sed-Chr4:34989634 Sed02g0668 Sed-Chr2:44514857 5.80E-66 dispersed
Sed02g0668 Sed-Chr2:44514857 Sed04g1242 Sed-Chr4:26107696 2.80E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78797 PF00069 Pkinase 1.30E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0668 - - - 0.0