Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0695 | ATGGGAGAAGAAGCAGCTGGCTTGGCTGCAGTTACGAATGAGCAGCTGGGGAATGCGAATGCTTTGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGAAACGGAACCCGAGCCTTTTCACAACAAGAAGCAGGCTAAGGAGGTGTCGAATGAAGACATTCGTTCAGAAGTTTCAAATCCCGTGATTTCTCCAAAAGGGAATCAGTTTCAAGATATTACTAGCCAGCCGGACAAGCTAGAAAATTCTAATCAAGTCCAGCGCAGGGACCTTGCTTTGGCTTATTCAGGAAATTCAAGCTCGGAGGATATCTCCAGCCATGGAGTTCGTTGCCAGAACAACACGTCTCGAAATGAGGCTGATATGTGTGATGTTGATGAGGTATCTCGGTTTGTGATTGAGGTTCCCAAGCATGCTAGTTCAACTGGCATTAGGAAAATTACGTTCAAATTTAGCAAAAAGAAGGACAACAATGGCACATCCTTGTTGGCTGGCAAAGTTCATTCTCATGGAAACTATGACAAGGACTACAAACCGGAACCATCGTCGGTCGATGATGCTTATATGGAGACCTCTGCACATAGCTCGGAAGGATGTGCTGAGAGCAGCAGGTTTCCTTCAGGTCCAAATAAAATGGAACTGAAAATGTCTAAGAAGGTTTTGCCAAACAATTACCCGTCAAATGTGAAAAAGTTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAGTATATATCTTCGACAAGAGAGATAAACCTCAATGGTATCCTAAATGGTATTATAAACGGCGGAGGTTATATGTGCGGATGTTCAATGTGCAATTTTACCACTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACCTCGAGAATGGGAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCACTTAGCATATTAGATGAAGTAATAAAGGAAGTAGCCGGTTCATCTGTTAACATGGATTCATTTGAGGCTTGGAAAGCAAACTTTCACCAGAACAGTACAAGTATTGAAGTGGAAAATGGTTATGTGAAGCTTCCTAAACTGTCGCATCCTTTTGAGAGACCAAACCCTAATTTATCCAACCCAGTCGTGCAACAGAAGAAAACGGCAGAAAAAGGCACAAGAAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGAGTTCCAGATGGGGCTGAGCTGGCTTACTTTGTCAAAGGACAGCAAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGAGAGATCAGTCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCTAGACGTCAACCCTACCGCCACATTTATACTACAAATGGGCTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAGCTTACAACGGGAGACAGCGATGATATGTGCGCTGCATGTGGTAATGGAGGCGATTTGATTTTCTGTGATCGCTGTCCTCGAGCTTACCATACAGGGTGCCTGCATCTGCAGAATGTTCCTGAAGGAGTTTGGTGTTGCCCAAACTGTAAAGATAAAGTGGGTTCCAGTTTGAAGGCTGCTTCGGGAGGTTCTTTGACTTTTCCAAAACCAATTGTATTCAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAAATTGGTGGCTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAATTTGATGACCGAACTGTACTGTTATGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGCCTTCGAGATAGTGGGTTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAACATCCATGTTGCCCTTCAGAATACAGTTTTGAACGGACCACAGATTATTCCAAATTCATTGTCAGATTTAATAATCAGAAAGCACGTTGGAAAAGGATTATTAGTCGACGAAGCTCTTAATGATGTCCGGTGGCAAATTTTAAGTGGAAAAAGCCGTTACCCAGAAGATCTTCCATTTCTTTCAAGGGCGACTGCCATTTTTCGGGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCCGTTATGGTTTACGGGAGAAATATATCTGGACAAGAGTTCGGAGGAATGTATTGTGTTGTTTTAATTGTGAGATCAATAGTTGTATCGGCTGGTCTTCTTCGGATCTTTGGTCGTGAAGTCGCCGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACGTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATTTGGACTAAGAAATTGGGTTTCAGAAAGATGAGTGAAGAACAATTAGCGAAGTACATGCGGGAGGTCCAGCTTACGATCTTCAACGGAACATCAATGCTAGAGAAGGTGGTGCAGCAGTCGACCTTATGA | 2541 | 43.45 | MGEEAAGLAAVTNEQLGNANALSTELKRDHQCLDEETEPEPFHNKKQAKEVSNEDIRSEVSNPVISPKGNQFQDITSQPDKLENSNQVQRRDLALAYSGNSSSEDISSHGVRCQNNTSRNEADMCDVDEVSRFVIEVPKHASSTGIRKITFKFSKKKDNNGTSLLAGKVHSHGNYDKDYKPEPSSVDDAYMETSAHSSEGCAESSRFPSGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISSTREINLNGILNGIINGGGYMCGCSMCNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNMDSFEAWKANFHQNSTSIEVENGYVKLPKLSHPFERPNPNLSNPVVQQKKTAEKGTRRRDNDLHRLLFMPNGVPDGAELAYFVKGQQILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAYHTGCLHLQNVPEGVWCCPNCKDKVGSSLKAASGGSLTFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGPQIIPNSLSDLIIRKHVGKGLLVDEALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNVVLPAAEDAESIWTKKLGFRKMSEEQLAKYMREVQLTIFNGTSMLEKVVQQSTL | 846 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 44809745 | 44817405 | + | Sed0021452.2 | Sed02g0695 | 704363 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0695 | 846 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 730 | 817 | IPR016181 | - | |
Sed02g0695 | 846 | MobiDBLite | consensus disorder prediction | 374 | 396 | - | - | |
Sed02g0695 | 846 | ProSiteProfiles | Zinc finger PHD-type profile. | 572 | 633 | IPR019787 | - | |
Sed02g0695 | 846 | Gene3D | - | 677 | 841 | - | - | |
Sed02g0695 | 846 | MobiDBLite | consensus disorder prediction | 27 | 56 | - | - | |
Sed02g0695 | 846 | FunFam | PHD finger family protein | 673 | 840 | - | - | |
Sed02g0695 | 846 | SUPERFAMILY | FYVE/PHD zinc finger | 573 | 628 | IPR011011 | - | |
Sed02g0695 | 846 | SUPERFAMILY | FYVE/PHD zinc finger | 491 | 539 | IPR011011 | - | |
Sed02g0695 | 846 | ProSiteProfiles | Zinc finger PHD-type profile. | 493 | 538 | IPR019787 | - | |
Sed02g0695 | 846 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 484 | 551 | IPR013083 | - | |
Sed02g0695 | 846 | Pfam | PHD-finger | 496 | 535 | IPR019787 | - | |
Sed02g0695 | 846 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
Sed02g0695 | 846 | ProSitePatterns | Zinc finger PHD-type signature. | 496 | 535 | IPR019786 | - | |
Sed02g0695 | 846 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 573 | 633 | IPR013083 | - | |
Sed02g0695 | 846 | SMART | PHD_3 | 574 | 631 | IPR001965 | - | |
Sed02g0695 | 846 | SMART | PHD_3 | 495 | 536 | IPR001965 | - | |
Sed02g0695 | 846 | Pfam | Tify domain binding domain | 262 | 316 | IPR032308 | - | |
Sed02g0695 | 846 | Pfam | Tify domain binding domain | 429 | 478 | IPR032308 | - | |
Sed02g0695 | 846 | PANTHER | AUTOIMMUNE REGULATOR | 40 | 843 | - | GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER) | |
Sed02g0695 | 846 | ProSitePatterns | Zinc finger PHD-type signature. | 575 | 630 | IPR019786 | - | |
Sed02g0695 | 846 | MobiDBLite | consensus disorder prediction | 57 | 86 | - | - | |
Sed02g0695 | 846 | MobiDBLite | consensus disorder prediction | 171 | 185 | - | - | |
Sed02g0695 | 846 | MobiDBLite | consensus disorder prediction | 374 | 388 | - | - | |
Sed02g0695 | 846 | MobiDBLite | consensus disorder prediction | 164 | 186 | - | - | |
Sed02g0695 | 846 | FunFam | PHD zinc finger protein | 573 | 633 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0695 | Sed-Chr2:44809745 | Sed04g1286 | Sed-Chr4:27072442 | 0.00E+00 | dispersed | |
Sed02g0694 | Sed-Chr2:44809745 | Sed02g0695 | Sed-Chr2:44809745 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37554 | PF16135 | TDBD | 2.30E-12 | No_clan | Sed | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0695 | - | - | - | 0.0 |