Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0695 ATGGGAGAAGAAGCAGCTGGCTTGGCTGCAGTTACGAATGAGCAGCTGGGGAATGCGAATGCTTTGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGAAACGGAACCCGAGCCTTTTCACAACAAGAAGCAGGCTAAGGAGGTGTCGAATGAAGACATTCGTTCAGAAGTTTCAAATCCCGTGATTTCTCCAAAAGGGAATCAGTTTCAAGATATTACTAGCCAGCCGGACAAGCTAGAAAATTCTAATCAAGTCCAGCGCAGGGACCTTGCTTTGGCTTATTCAGGAAATTCAAGCTCGGAGGATATCTCCAGCCATGGAGTTCGTTGCCAGAACAACACGTCTCGAAATGAGGCTGATATGTGTGATGTTGATGAGGTATCTCGGTTTGTGATTGAGGTTCCCAAGCATGCTAGTTCAACTGGCATTAGGAAAATTACGTTCAAATTTAGCAAAAAGAAGGACAACAATGGCACATCCTTGTTGGCTGGCAAAGTTCATTCTCATGGAAACTATGACAAGGACTACAAACCGGAACCATCGTCGGTCGATGATGCTTATATGGAGACCTCTGCACATAGCTCGGAAGGATGTGCTGAGAGCAGCAGGTTTCCTTCAGGTCCAAATAAAATGGAACTGAAAATGTCTAAGAAGGTTTTGCCAAACAATTACCCGTCAAATGTGAAAAAGTTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAGTATATATCTTCGACAAGAGAGATAAACCTCAATGGTATCCTAAATGGTATTATAAACGGCGGAGGTTATATGTGCGGATGTTCAATGTGCAATTTTACCACTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACCTCGAGAATGGGAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCACTTAGCATATTAGATGAAGTAATAAAGGAAGTAGCCGGTTCATCTGTTAACATGGATTCATTTGAGGCTTGGAAAGCAAACTTTCACCAGAACAGTACAAGTATTGAAGTGGAAAATGGTTATGTGAAGCTTCCTAAACTGTCGCATCCTTTTGAGAGACCAAACCCTAATTTATCCAACCCAGTCGTGCAACAGAAGAAAACGGCAGAAAAAGGCACAAGAAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGAGTTCCAGATGGGGCTGAGCTGGCTTACTTTGTCAAAGGACAGCAAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGAGAGATCAGTCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCTAGACGTCAACCCTACCGCCACATTTATACTACAAATGGGCTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAGCTTACAACGGGAGACAGCGATGATATGTGCGCTGCATGTGGTAATGGAGGCGATTTGATTTTCTGTGATCGCTGTCCTCGAGCTTACCATACAGGGTGCCTGCATCTGCAGAATGTTCCTGAAGGAGTTTGGTGTTGCCCAAACTGTAAAGATAAAGTGGGTTCCAGTTTGAAGGCTGCTTCGGGAGGTTCTTTGACTTTTCCAAAACCAATTGTATTCAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAAATTGGTGGCTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAATTTGATGACCGAACTGTACTGTTATGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGCCTTCGAGATAGTGGGTTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAACATCCATGTTGCCCTTCAGAATACAGTTTTGAACGGACCACAGATTATTCCAAATTCATTGTCAGATTTAATAATCAGAAAGCACGTTGGAAAAGGATTATTAGTCGACGAAGCTCTTAATGATGTCCGGTGGCAAATTTTAAGTGGAAAAAGCCGTTACCCAGAAGATCTTCCATTTCTTTCAAGGGCGACTGCCATTTTTCGGGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCCGTTATGGTTTACGGGAGAAATATATCTGGACAAGAGTTCGGAGGAATGTATTGTGTTGTTTTAATTGTGAGATCAATAGTTGTATCGGCTGGTCTTCTTCGGATCTTTGGTCGTGAAGTCGCCGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACGTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATTTGGACTAAGAAATTGGGTTTCAGAAAGATGAGTGAAGAACAATTAGCGAAGTACATGCGGGAGGTCCAGCTTACGATCTTCAACGGAACATCAATGCTAGAGAAGGTGGTGCAGCAGTCGACCTTATGA 2541 43.45 MGEEAAGLAAVTNEQLGNANALSTELKRDHQCLDEETEPEPFHNKKQAKEVSNEDIRSEVSNPVISPKGNQFQDITSQPDKLENSNQVQRRDLALAYSGNSSSEDISSHGVRCQNNTSRNEADMCDVDEVSRFVIEVPKHASSTGIRKITFKFSKKKDNNGTSLLAGKVHSHGNYDKDYKPEPSSVDDAYMETSAHSSEGCAESSRFPSGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISSTREINLNGILNGIINGGGYMCGCSMCNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNMDSFEAWKANFHQNSTSIEVENGYVKLPKLSHPFERPNPNLSNPVVQQKKTAEKGTRRRDNDLHRLLFMPNGVPDGAELAYFVKGQQILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAYHTGCLHLQNVPEGVWCCPNCKDKVGSSLKAASGGSLTFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGPQIIPNSLSDLIIRKHVGKGLLVDEALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNVVLPAAEDAESIWTKKLGFRKMSEEQLAKYMREVQLTIFNGTSMLEKVVQQSTL 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44809745 44817405 + Sed0021452.2 Sed02g0695 704363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0695 846 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 730 817 IPR016181 -
Sed02g0695 846 MobiDBLite consensus disorder prediction 374 396 - -
Sed02g0695 846 ProSiteProfiles Zinc finger PHD-type profile. 572 633 IPR019787 -
Sed02g0695 846 Gene3D - 677 841 - -
Sed02g0695 846 MobiDBLite consensus disorder prediction 27 56 - -
Sed02g0695 846 FunFam PHD finger family protein 673 840 - -
Sed02g0695 846 SUPERFAMILY FYVE/PHD zinc finger 573 628 IPR011011 -
Sed02g0695 846 SUPERFAMILY FYVE/PHD zinc finger 491 539 IPR011011 -
Sed02g0695 846 ProSiteProfiles Zinc finger PHD-type profile. 493 538 IPR019787 -
Sed02g0695 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 551 IPR013083 -
Sed02g0695 846 Pfam PHD-finger 496 535 IPR019787 -
Sed02g0695 846 MobiDBLite consensus disorder prediction 1 86 - -
Sed02g0695 846 ProSitePatterns Zinc finger PHD-type signature. 496 535 IPR019786 -
Sed02g0695 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 573 633 IPR013083 -
Sed02g0695 846 SMART PHD_3 574 631 IPR001965 -
Sed02g0695 846 SMART PHD_3 495 536 IPR001965 -
Sed02g0695 846 Pfam Tify domain binding domain 262 316 IPR032308 -
Sed02g0695 846 Pfam Tify domain binding domain 429 478 IPR032308 -
Sed02g0695 846 PANTHER AUTOIMMUNE REGULATOR 40 843 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Sed02g0695 846 ProSitePatterns Zinc finger PHD-type signature. 575 630 IPR019786 -
Sed02g0695 846 MobiDBLite consensus disorder prediction 57 86 - -
Sed02g0695 846 MobiDBLite consensus disorder prediction 171 185 - -
Sed02g0695 846 MobiDBLite consensus disorder prediction 374 388 - -
Sed02g0695 846 MobiDBLite consensus disorder prediction 164 186 - -
Sed02g0695 846 FunFam PHD zinc finger protein 573 633 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0695 Sed-Chr2:44809745 Sed04g1286 Sed-Chr4:27072442 0.00E+00 dispersed
Sed02g0694 Sed-Chr2:44809745 Sed02g0695 Sed-Chr2:44809745 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37554 PF16135 TDBD 2.30E-12 No_clan Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0695 - - - 0.0