Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0695 ATGGGAGAAGAAGCAGCTGGCTTGGCTGCAGTTACGAATGAGCAGCTGGGGAATGCGAATGCTTTGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGAAACGGAACCCGAGCCTTTTCACAACAAGAAGCAGGCTAAGGAGGTGTCGAATGAAGACATTCGTTCAGAAGTTTCAAATCCCGTGATTTCTCCAAAAGGGAATCAGTTTCAAGATATTACTAGCCAGCCGGACAAGCTAGAAAATTCTAATCAAGTCCAGCGCAGGGACCTTGCTTTGGCTTATTCAGGAAATTCAAGCTCGGAGGATATCTCCAGCCATGGAGTTCGTTGCCAGAACAACACGTCTCGAAATGAGGCTGATATGTGTGATGTTGATGAGGTATCTCGGTTTGTGATTGAGGTTCCCAAGCATGCTAGTTCAACTGGCATTAGGAAAATTACGTTCAAATTTAGCAAAAAGAAGGACAACAATGGCACATCCTTGTTGGCTGGCAAAGTTCATTCTCATGGAAACTATGACAAGGACTACAAACCGGAACCATCGTCGGTCGATGATGCTTATATGGAGACCTCTGCACATAGCTCGGAAGGATGTGCTGAGAGCAGCAGGTTTCCTTCAGGTCCAAATAAAATGGAACTGAAAATGTCTAAGAAGGTTTTGCCAAACAATTACCCGTCAAATGTGAAAAAGTTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAGTATATATCTTCGACAAGAGAGATAAACCTCAATGGTATCCTAAATGGTATTATAAACGGCGGAGGTTATATGTGCGGATGTTCAATGTGCAATTTTACCACTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACCTCGAGAATGGGAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCACTTAGCATATTAGATGAAGTAATAAAGGAAGTAGCCGGTTCATCTGTTAACATGGATTCATTTGAGGCTTGGAAAGCAAACTTTCACCAGAACAGTACAAGTATTGAAGTGGAAAATGGTTATGTGAAGCTTCCTAAACTGTCGCATCCTTTTGAGAGACCAAACCCTAATTTATCCAACCCAGTCGTGCAACAGAAGAAAACGGCAGAAAAAGGCACAAGAAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGAGTTCCAGATGGGGCTGAGCTGGCTTACTTTGTCAAAGGACAGCAAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGAGAGATCAGTCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCTAGACGTCAACCCTACCGCCACATTTATACTACAAATGGGCTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAGCTTACAACGGGAGACAGCGATGATATGTGCGCTGCATGTGGTAATGGAGGCGATTTGATTTTCTGTGATCGCTGTCCTCGAGCTTACCATACAGGGTGCCTGCATCTGCAGAATGTTCCTGAAGGAGTTTGGTGTTGCCCAAACTGTAAAGATAAAGTGGGTTCCAGTTTGAAGGCTGCTTCGGGAGGTTCTTTGACTTTTCCAAAACCAATTGTATTCAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAAATTGGTGGCTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAATTTGATGACCGAACTGTACTGTTATGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGCCTTCGAGATAGTGGGTTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAACATCCATGTTGCCCTTCAGAATACAGTTTTGAACGGACCACAGATTATTCCAAATTCATTGTCAGATTTAATAATCAGAAAGCACGTTGGAAAAGGATTATTAGTCGACGAAGCTCTTAATGATGTCCGGTGGCAAATTTTAAGTGGAAAAAGCCGTTACCCAGAAGATCTTCCATTTCTTTCAAGGGCGACTGCCATTTTTCGGGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCCGTTATGGTTTACGGGAGAAATATATCTGGACAAGAGTTCGGAGGAATGTATTGTGTTGTTTTAATTGTGAGATCAATAGTTGTATCGGCTGGTCTTCTTCGGATCTTTGGTCGTGAAGTCGCCGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACGTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATTTGGACTAAGAAATTGGGTTTCAGAAAGATGAGTGAAGAACAATTAGCGAAGTACATGCGGGAGGTCCAGCTTACGATCTTCAACGGAACATCAATGCTAGAGAAGGTGGTGCAGCAGTCGACCTTATGA 2541 43.45 MGEEAAGLAAVTNEQLGNANALSTELKRDHQCLDEETEPEPFHNKKQAKEVSNEDIRSEVSNPVISPKGNQFQDITSQPDKLENSNQVQRRDLALAYSGNSSSEDISSHGVRCQNNTSRNEADMCDVDEVSRFVIEVPKHASSTGIRKITFKFSKKKDNNGTSLLAGKVHSHGNYDKDYKPEPSSVDDAYMETSAHSSEGCAESSRFPSGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISSTREINLNGILNGIINGGGYMCGCSMCNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNMDSFEAWKANFHQNSTSIEVENGYVKLPKLSHPFERPNPNLSNPVVQQKKTAEKGTRRRDNDLHRLLFMPNGVPDGAELAYFVKGQQILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAYHTGCLHLQNVPEGVWCCPNCKDKVGSSLKAASGGSLTFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGPQIIPNSLSDLIIRKHVGKGLLVDEALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNVVLPAAEDAESIWTKKLGFRKMSEEQLAKYMREVQLTIFNGTSMLEKVVQQSTL 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44809745 44817405 + Sed0021452.2 Sed02g0695 704363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0695 846 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 730 817 IPR016181 -
Sed02g0695 846 MobiDBLite consensus disorder prediction 374 396 - -
Sed02g0695 846 ProSiteProfiles Zinc finger PHD-type profile. 572 633 IPR019787 -
Sed02g0695 846 Gene3D - 677 841 - -
Sed02g0695 846 MobiDBLite consensus disorder prediction 27 56 - -
Sed02g0695 846 FunFam PHD finger family protein 673 840 - -
Sed02g0695 846 SUPERFAMILY FYVE/PHD zinc finger 573 628 IPR011011 -
Sed02g0695 846 SUPERFAMILY FYVE/PHD zinc finger 491 539 IPR011011 -
Sed02g0695 846 ProSiteProfiles Zinc finger PHD-type profile. 493 538 IPR019787 -
Sed02g0695 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 551 IPR013083 -
Sed02g0695 846 Pfam PHD-finger 496 535 IPR019787 -
Sed02g0695 846 MobiDBLite consensus disorder prediction 1 86 - -
Sed02g0695 846 ProSitePatterns Zinc finger PHD-type signature. 496 535 IPR019786 -
Sed02g0695 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 573 633 IPR013083 -
Sed02g0695 846 SMART PHD_3 574 631 IPR001965 -
Sed02g0695 846 SMART PHD_3 495 536 IPR001965 -
Sed02g0695 846 Pfam Tify domain binding domain 262 316 IPR032308 -
Sed02g0695 846 Pfam Tify domain binding domain 429 478 IPR032308 -
Sed02g0695 846 PANTHER AUTOIMMUNE REGULATOR 40 843 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Sed02g0695 846 ProSitePatterns Zinc finger PHD-type signature. 575 630 IPR019786 -
Sed02g0695 846 MobiDBLite consensus disorder prediction 57 86 - -
Sed02g0695 846 MobiDBLite consensus disorder prediction 171 185 - -
Sed02g0695 846 MobiDBLite consensus disorder prediction 374 388 - -
Sed02g0695 846 MobiDBLite consensus disorder prediction 164 186 - -
Sed02g0695 846 FunFam PHD zinc finger protein 573 633 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0695 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0695 Sed-Chr2:44809745 Sed04g1286 Sed-Chr4:27072442 0.00E+00 dispersed
Sed02g0694 Sed-Chr2:44809745 Sed02g0695 Sed-Chr2:44809745 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g1413 . 26 689 PHD Transcription Factor Family AT2G36720 53.2 2.9e-200 696.8
Sed02g0694 . 25 841 PHD Transcription Factor Family AT3G53680 53.0 8.5e-246 847.8
Sed02g0695 . 25 841 PHD Transcription Factor Family AT3G53680 53.0 8.5e-246 847.8
Sed04g1286 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1287 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1288 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1413 . 228 685 PHD Transcription Factor Family AT3G53680 52.6 2.5e-136 484.2
Sed05g2940 . 313 451 PHD Transcription Factor Family AT3G53680 51.1 9.9e-37 153.3
Sed04g2818 . 440 566 PHD Transcription Factor Family AT3G53680 53.5 2.2e-36 152.1
Sed04g2819 . 440 566 PHD Transcription Factor Family AT3G53680 53.5 2.2e-36 152.1
Sed07g2464 . 435 563 PHD Transcription Factor Family AT3G53680 53.5 4.9e-36 151.0
Sed05g2941 . 313 448 PHD Transcription Factor Family AT3G53680 50.7 4.9e-36 151.0
Sed07g2462 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2463 . 435 564 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2465 . 435 564 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2466 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2467 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed12g1554 . 251 395 PHD Transcription Factor Family AT5G12400 52.3 1.2e-38 160.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37554 PF16135 TDBD 2.30E-12 No_clan Sed TR