Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0708 ATGCCGAGAAAAGGAATGAGGAGTTTCCTCTACCAATTCTCGTCGCCGGCGAATTCCATTTCGAGGTATTCGATCTCGTCGCCGGCTAGAACGCCGGCCTTGACTCCACGGCGGAGCTTCAACGACTCCATGATCGAACAGACCGTCGAATCCGCGGCGGCGATTGTGATGAAATGGAATCTGGATTCTTCAACTTACTCCAAAGTTACTTCCATGTTCTATGAAGATAAACGAGAAGCTAAACAGTTCATCAAACGCGTGAATGATCTTCAGAAAGCGATGCATCTCATGGTTTCTGAAGATTCTAGTTCGGAGAGGCTCGTTTACGCTCAAGGATTGATGGAAATCGCCATGAAACGGCTCAAGAAGGAGTTTTATCAGATTCTCTCGATGAATCGTGCTCATCTCGATCCGGAATCTGTTTCTACTCGATCCTCTCGCTGCTCGGCTCGATCGAGCATTTCGGTTGATTTCGAGGAAGATAAAGGCCTAGACGATGAAATCCAAGCTGTAGGAGACTCGATCTCTGAAGTTGAGGAGGTTTCTTTCACTGTAATGGAGGATTTGCGCGTTATAGCTGAGTGTATGATCTCCTCTGGCTACGCTAAAGAGTGTGTTAATATGTATAAACAGATTCGTAAATCGATCATCGATGAAGGTGTTTACCGGCTCGGATTTGAGAAATTGAGCGCTTCGAGAATCAATAAGATGGATTGGGAGGTGCTGGATCTCAAAATCAAGAACTGGTTGGATTCGATTAAACTCGCGATTCGAACATTGTTCATTGGCGAACGGATTCTCTGCGATCACGTTTTTTCCTCCTCTGATTCGATTCGAGAATCCTGTTTTGCAGATCTATCAAGAGAAGGCGCTTTGATTCTGTTAGGATTTCCAGAACTTGTTGCGAAAAGTAAGAAATCGCCAGAAAAAATGTTCCGTGTTCTTGATATGTACTCATCAATCAACGAAAATTTGACGGAAATCGAAGCGATTTTCTCGTCTGATTCCACATCTGAAGTTCGATCTCAAGCTCTAACCTCACTCGCAAAACTCAGCGAGTTAGTCCGCGCCATTGTTTTGGATCTGGAGCTTTCGATTCAGAAACATTCATCCAAATCGCCGGTCGCAGGCTGCGGCGTCGATTCCTTAACGCTTCTCTCCATGGATTACCTCACATTCCTCGCCGATTACACCAACGCATTGACGGACATTTTCGCCGGTTGGATTCCGCCGGAGAAATCCTCTCTCAATCAAATTTACTTCAGCGGTTCAGAATCGGAAGACTCCGCAACGAATTCTTCGATCTCATTACGAATCGGATGCCTAATTCTAGTCCTGATCTGCAAACTCGACAGCAAAGCCAGACGCTACAAAGACATTTCACATTCTTACCTATTCCTCGCTAACAATCTTCAACACATCATCTCCAAAGTCCGATCCTCGAATCTTCAGTACCTAATCGGCAACGATTGGATCGCGAAGCACGAAGCGAAGGTAAGGCAATTCACAGCGAGGTACGAGGCGTTGGCTTGGAGCAGAGTGTTCGACTCCTTGCCGGAGAATCCGACGGAGAAATTTTCACCGGAGGAATCCAAAGAAATCTTCAGGAACTTCAATATGGCGTTTGAAGAAACGCATCGGAAGCAGAAATCGTGCATTATTCCCGATCCGAAGCTTCGAGACGAAGTGAAGCGATCAATCGGAAGAAAACTCGTGTTGTTTTATGGAGAATTTTACAGAGCGCAGAAACCGTTTGATGGCGGTACTGAAAAACGGTACATTAGATTCTCGCCGGAAGATATCGGTAACTGTCTTTCTGATCTCTATTTTGAGCCGTCCGATTGGGCGAGCGTTTCGACCTCGTCGCCGTCGTCGACCTCCTCCTCTCACCGGCGGGAACCTGGGCCCCGTTAA 1914 46.5 MPRKGMRSFLYQFSSPANSISRYSISSPARTPALTPRRSFNDSMIEQTVESAAAIVMKWNLDSSTYSKVTSMFYEDKREAKQFIKRVNDLQKAMHLMVSEDSSSERLVYAQGLMEIAMKRLKKEFYQILSMNRAHLDPESVSTRSSRCSARSSISVDFEEDKGLDDEIQAVGDSISEVEEVSFTVMEDLRVIAECMISSGYAKECVNMYKQIRKSIIDEGVYRLGFEKLSASRINKMDWEVLDLKIKNWLDSIKLAIRTLFIGERILCDHVFSSSDSIRESCFADLSREGALILLGFPELVAKSKKSPEKMFRVLDMYSSINENLTEIEAIFSSDSTSEVRSQALTSLAKLSELVRAIVLDLELSIQKHSSKSPVAGCGVDSLTLLSMDYLTFLADYTNALTDIFAGWIPPEKSSLNQIYFSGSESEDSATNSSISLRIGCLILVLICKLDSKARRYKDISHSYLFLANNLQHIISKVRSSNLQYLIGNDWIAKHEAKVRQFTARYEALAWSRVFDSLPENPTEKFSPEESKEIFRNFNMAFEETHRKQKSCIIPDPKLRDEVKRSIGRKLVLFYGEFYRAQKPFDGGTEKRYIRFSPEDIGNCLSDLYFEPSDWASVSTSSPSSTSSSHRREPGPR 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44923836 44926098 + Sed0004232.1 Sed02g0708 704376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0708 637 Gene3D Exocyst complex component Exo70 54 615 - -
Sed02g0708 637 PANTHER EXOCYST COMPLEX PROTEIN EXO70 46 610 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed02g0708 637 SUPERFAMILY Cullin repeat-like 76 609 IPR016159 -
Sed02g0708 637 Pfam Exo70 exocyst complex subunit C-terminal 247 607 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed02g0708 637 Pfam Exocyst complex component Exo70 N-terminal 48 130 - -
Sed02g0708 637 MobiDBLite consensus disorder prediction 615 637 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0708 Sed-Chr2:44923836 Sed13g1351 Sed-Chr13:19019674 2.70E-151 dispersed
Sed14g0449 Sed-Chr14:4538046 Sed02g0708 Sed-Chr2:44923836 1.60E-126 wgd
Sed02g0708 Sed-Chr2:44923836 Sed04g1299 Sed-Chr4:27209667 1.50E-290 wgd
Sed02g0708 Sed-Chr2:44923836 Sed07g2435 Sed-Chr7:40175971 1.40E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0708 K07195 - csv:101208543 1023.85