Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0715 | ATGGAAGAATTAGAGGCCCCCACAGTCATCATGGCCGCCCTCTCAACTCTCCCTCCGCCGCATCTCTCCGATCTGTCCCACTCCATCTTCTCCGACAGCCACCACCGGCGCCGCCGCCTGACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTTCCCCTCTCCCACAAATCCATCCTCATCGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAACCGCCGTCTCCGCCGCCGCCCACCTCCGCCGTCTCTCCCCGCGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTCCGGCAGCACAACCCCACCGCCCTCAAAGCTCCGATCAACCAATGGCGCTCGACCCTTTGTAGAATCTACTCCGATTCCCTCTTGTCGATCTCCGGCGTCGCCACTGGCGGCGCCGCCGCCAGCGTCTTGATTCCCTACGTTGAGACGGTGGCGCGGTGCTGGAAGTTCGTGGGGTTTGTTGGGAGCTGCGGTGGGAAGGCCCGGAGGGAGGTGGCGGCGTCGGCGGTGGCGGTGGTGGAGCTGCCGTCGGTGGCGGTTAGCGGCAGCGGCGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGTATGAAGGGAGAGACGCGTGTCAGTTGCCATGTGAGCACTTGTTTCATTGGCTGTGCATTCTGCCGTGGCTGAGGAAGACGAACACGTGTCCCTGCTGCAGGTTTCAGCTTCCCACGGATGATATCTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCGTTAAAGTGGGCTCCACGATGTGTGATTGA | 834 | 62.95 | MEELEAPTVIMAALSTLPPPHLSDLSHSIFSDSHHRRRRLTFILSSPTLFSLTLRHLNSLPLSHKSILIARFLLSALRRLSRPFQPPSPPPPTSAVSPRDLDAAVLLLLLCEVRQHNPTALKAPINQWRSTLCRIYSDSLLSISGVATGGAAASVLIPYVETVARCWKFVGFVGSCGGKARREVAASAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCILPWLRKTNTCPCCRFQLPTDDIFGEIQRLWEILVKVGSTMCD | 277 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 44996584 | 44997417 | + | Sed0022305.1 | Sed02g0715 | 704383 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0715 | 277 | Pfam | Ring finger domain | 207 | 249 | IPR001841 | - | |
Sed02g0715 | 277 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 255 | IPR013083 | - | |
Sed02g0715 | 277 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 181 | 254 | - | GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
Sed02g0715 | 277 | SMART | ring_2 | 208 | 248 | IPR001841 | - | |
Sed02g0715 | 277 | SUPERFAMILY | RING/U-box | 202 | 255 | - | - | |
Sed02g0715 | 277 | CDD | RING-H2_PA-TM-RING | 207 | 249 | - | - | |
Sed02g0715 | 277 | ProSiteProfiles | Zinc finger RING-type profile. | 208 | 249 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0715 | Sed-Chr2:44996584 | Sed03g2405 | Sed-Chr3:20492793 | 5.60E-13 | dispersed | |
Sed02g0715 | Sed-Chr2:44996584 | Sed07g2500 | Sed-Chr7:40709366 | 2.50E-13 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0715 | - | - | - | 0.0 |