Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0715 ATGGAAGAATTAGAGGCCCCCACAGTCATCATGGCCGCCCTCTCAACTCTCCCTCCGCCGCATCTCTCCGATCTGTCCCACTCCATCTTCTCCGACAGCCACCACCGGCGCCGCCGCCTGACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTTCCCCTCTCCCACAAATCCATCCTCATCGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAACCGCCGTCTCCGCCGCCGCCCACCTCCGCCGTCTCTCCCCGCGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTCCGGCAGCACAACCCCACCGCCCTCAAAGCTCCGATCAACCAATGGCGCTCGACCCTTTGTAGAATCTACTCCGATTCCCTCTTGTCGATCTCCGGCGTCGCCACTGGCGGCGCCGCCGCCAGCGTCTTGATTCCCTACGTTGAGACGGTGGCGCGGTGCTGGAAGTTCGTGGGGTTTGTTGGGAGCTGCGGTGGGAAGGCCCGGAGGGAGGTGGCGGCGTCGGCGGTGGCGGTGGTGGAGCTGCCGTCGGTGGCGGTTAGCGGCAGCGGCGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGTATGAAGGGAGAGACGCGTGTCAGTTGCCATGTGAGCACTTGTTTCATTGGCTGTGCATTCTGCCGTGGCTGAGGAAGACGAACACGTGTCCCTGCTGCAGGTTTCAGCTTCCCACGGATGATATCTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCGTTAAAGTGGGCTCCACGATGTGTGATTGA 834 62.95 MEELEAPTVIMAALSTLPPPHLSDLSHSIFSDSHHRRRRLTFILSSPTLFSLTLRHLNSLPLSHKSILIARFLLSALRRLSRPFQPPSPPPPTSAVSPRDLDAAVLLLLLCEVRQHNPTALKAPINQWRSTLCRIYSDSLLSISGVATGGAAASVLIPYVETVARCWKFVGFVGSCGGKARREVAASAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCILPWLRKTNTCPCCRFQLPTDDIFGEIQRLWEILVKVGSTMCD 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44996584 44997417 + Sed0022305.1 Sed02g0715 704383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0715 277 Pfam Ring finger domain 207 249 IPR001841 -
Sed02g0715 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 255 IPR013083 -
Sed02g0715 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 181 254 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Sed02g0715 277 SMART ring_2 208 248 IPR001841 -
Sed02g0715 277 SUPERFAMILY RING/U-box 202 255 - -
Sed02g0715 277 CDD RING-H2_PA-TM-RING 207 249 - -
Sed02g0715 277 ProSiteProfiles Zinc finger RING-type profile. 208 249 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0715 Sed-Chr2:44996584 Sed03g2405 Sed-Chr3:20492793 5.60E-13 dispersed
Sed02g0715 Sed-Chr2:44996584 Sed07g2500 Sed-Chr7:40709366 2.50E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0715 - - - 0.0