Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0716 | ATGGTCAAACCCTGCTGGCAAACCCATGATGATGACGATTCAAACGGGCGAGTTGATGGATTGCTGTGGTCTAAGGATCTGGGTCACCATGTTTATGGACAATTCTCCATGGCAGTCATCCAAGCTAATACTGTAGTTGAAGATCAAAGCCAGCTTGAATCTGGGGCATTGAGTATGTCCAATCCAGGTCCGCAGGGGACTTTCGTTGGAGTTTACGACGGTCATGGCGGAACCGAAGCTTCACGGTTCGTCAATGACAATCTCTTCCACAATCTCAAAAGATATGCATCTTTGCAGCAGAACATATCAGAAAACGTTATCAGGAAGGCTTATGAAGCAACAGAAGAGGGATTTCTATCTCTTGTCCAGAAACAGTGGCTTAATGAACCAAAGATTGCATCTGCTGGAACATGTTGTTTGGTGGGGATCATATGCAATGGGCAGCTATATATTGCAAACGCAGGCGATTCACGAGTAGTGCTCGGGAGAACGGAGCGAGCCACCAAAGAGATCATTGCCATTCAATTGTCTACAGAGCACAATGCAAGCATAGACTCAGTGAGAGATGAACTTCGGATGGTTCATCCAGACGATCCTCAGATTGTGATCCTAAAATACAATGTTTGGCGTGTTAAAGGCATCATACAGATTTCAAGATCAATTGGTGACGCATATTTGAAAAAGGCAAAATTCAACAGACCTCCTCTACCGCCTAAATTTCAACTGCCTGAGCCCTTTTACAAACCGATTCTCAGCGCAGAACCGTCAATACTTGTACACAGACTCCGCCCAGATGATCAATATCTCATATTTGCTTCTGATGGCCTGTGGGAGCACCTAAGCAACCAGAAGGCTGTTGACATCGTCAACAGCTATCCTCGAAATGGAATAGCAAGTAGACTTGTAAAGGCTGCACTACGAGAAGCAGCTAAAAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATAGATAGAGGCGTGAGAAGGCATTTCCACGATGACATTTCTGTTGTAGTTGTGTTTTTAGATCCTCATTTGACCAACAGTACGCCCTCTCCTTGTTCGATGTCAATCAGAGGAGGAGGTCTCTCTTCATCCACAAACTCCTAG | 1110 | 44.68 | MVKPCWQTHDDDDSNGRVDGLLWSKDLGHHVYGQFSMAVIQANTVVEDQSQLESGALSMSNPGPQGTFVGVYDGHGGTEASRFVNDNLFHNLKRYASLQQNISENVIRKAYEATEEGFLSLVQKQWLNEPKIASAGTCCLVGIICNGQLYIANAGDSRVVLGRTERATKEIIAIQLSTEHNASIDSVRDELRMVHPDDPQIVILKYNVWRVKGIIQISRSIGDAYLKKAKFNRPPLPPKFQLPEPFYKPILSAEPSILVHRLRPDDQYLIFASDGLWEHLSNQKAVDIVNSYPRNGIASRLVKAALREAAKKREMRYSDLKKIDRGVRRHFHDDISVVVVFLDPHLTNSTPSPCSMSIRGGGLSSSTNS | 369 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 45005033 | 45010143 | + | Sed0001842.1 | Sed02g0716 | 704384 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0716 | 369 | PANTHER | PROTEIN PHOSPHATASE | 28 | 341 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Sed02g0716 | 369 | Pfam | Protein phosphatase 2C | 62 | 311 | IPR001932 | - | |
Sed02g0716 | 369 | SMART | PP2C_4 | 12 | 340 | IPR001932 | - | |
Sed02g0716 | 369 | FunFam | Phosphatase 2C family protein | 23 | 352 | - | - | |
Sed02g0716 | 369 | Gene3D | - | 22 | 350 | IPR036457 | - | |
Sed02g0716 | 369 | SUPERFAMILY | PP2C-like | 40 | 344 | IPR036457 | - | |
Sed02g0716 | 369 | ProSiteProfiles | PPM-type phosphatase domain profile. | 34 | 342 | IPR001932 | - | |
Sed02g0716 | 369 | CDD | PP2Cc | 59 | 342 | IPR001932 | - | |
Sed02g0716 | 369 | ProSitePatterns | PPM-type phosphatase domain signature. | 68 | 76 | IPR000222 | GO:0043169(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0716 | Sed-Chr2:45005033 | Sed04g1309 | Sed-Chr4:27389475 | 2.10E-196 | dispersed | |
Sed02g0716 | Sed-Chr2:45005033 | Sed02g0717 | Sed-Chr2:45005033 | 1.70E-214 | tandem | |
Sed02g0716 | Sed-Chr2:45005033 | Sed04g1308 | Sed-Chr4:27389475 | 2.10E-196 | wgd | |
Sed02g0716 | Sed-Chr2:45005033 | Sed04g2728 | Sed-Chr4:39568291 | 7.20E-141 | wgd | |
Sed02g0716 | Sed-Chr2:45005033 | Sed07g2417 | Sed-Chr7:40031912 | 4.70E-140 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0716 | - | - | - | 0.0 |