Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0716 ATGGTCAAACCCTGCTGGCAAACCCATGATGATGACGATTCAAACGGGCGAGTTGATGGATTGCTGTGGTCTAAGGATCTGGGTCACCATGTTTATGGACAATTCTCCATGGCAGTCATCCAAGCTAATACTGTAGTTGAAGATCAAAGCCAGCTTGAATCTGGGGCATTGAGTATGTCCAATCCAGGTCCGCAGGGGACTTTCGTTGGAGTTTACGACGGTCATGGCGGAACCGAAGCTTCACGGTTCGTCAATGACAATCTCTTCCACAATCTCAAAAGATATGCATCTTTGCAGCAGAACATATCAGAAAACGTTATCAGGAAGGCTTATGAAGCAACAGAAGAGGGATTTCTATCTCTTGTCCAGAAACAGTGGCTTAATGAACCAAAGATTGCATCTGCTGGAACATGTTGTTTGGTGGGGATCATATGCAATGGGCAGCTATATATTGCAAACGCAGGCGATTCACGAGTAGTGCTCGGGAGAACGGAGCGAGCCACCAAAGAGATCATTGCCATTCAATTGTCTACAGAGCACAATGCAAGCATAGACTCAGTGAGAGATGAACTTCGGATGGTTCATCCAGACGATCCTCAGATTGTGATCCTAAAATACAATGTTTGGCGTGTTAAAGGCATCATACAGATTTCAAGATCAATTGGTGACGCATATTTGAAAAAGGCAAAATTCAACAGACCTCCTCTACCGCCTAAATTTCAACTGCCTGAGCCCTTTTACAAACCGATTCTCAGCGCAGAACCGTCAATACTTGTACACAGACTCCGCCCAGATGATCAATATCTCATATTTGCTTCTGATGGCCTGTGGGAGCACCTAAGCAACCAGAAGGCTGTTGACATCGTCAACAGCTATCCTCGAAATGGAATAGCAAGTAGACTTGTAAAGGCTGCACTACGAGAAGCAGCTAAAAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATAGATAGAGGCGTGAGAAGGCATTTCCACGATGACATTTCTGTTGTAGTTGTGTTTTTAGATCCTCATTTGACCAACAGTACGCCCTCTCCTTGTTCGATGTCAATCAGAGGAGGAGGTCTCTCTTCATCCACAAACTCCTAG 1110 44.68 MVKPCWQTHDDDDSNGRVDGLLWSKDLGHHVYGQFSMAVIQANTVVEDQSQLESGALSMSNPGPQGTFVGVYDGHGGTEASRFVNDNLFHNLKRYASLQQNISENVIRKAYEATEEGFLSLVQKQWLNEPKIASAGTCCLVGIICNGQLYIANAGDSRVVLGRTERATKEIIAIQLSTEHNASIDSVRDELRMVHPDDPQIVILKYNVWRVKGIIQISRSIGDAYLKKAKFNRPPLPPKFQLPEPFYKPILSAEPSILVHRLRPDDQYLIFASDGLWEHLSNQKAVDIVNSYPRNGIASRLVKAALREAAKKREMRYSDLKKIDRGVRRHFHDDISVVVVFLDPHLTNSTPSPCSMSIRGGGLSSSTNS 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45005033 45010143 + Sed0001842.1 Sed02g0716 704384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0716 369 PANTHER PROTEIN PHOSPHATASE 28 341 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed02g0716 369 Pfam Protein phosphatase 2C 62 311 IPR001932 -
Sed02g0716 369 SMART PP2C_4 12 340 IPR001932 -
Sed02g0716 369 FunFam Phosphatase 2C family protein 23 352 - -
Sed02g0716 369 Gene3D - 22 350 IPR036457 -
Sed02g0716 369 SUPERFAMILY PP2C-like 40 344 IPR036457 -
Sed02g0716 369 ProSiteProfiles PPM-type phosphatase domain profile. 34 342 IPR001932 -
Sed02g0716 369 CDD PP2Cc 59 342 IPR001932 -
Sed02g0716 369 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0716 Sed-Chr2:45005033 Sed04g1309 Sed-Chr4:27389475 2.10E-196 dispersed
Sed02g0716 Sed-Chr2:45005033 Sed02g0717 Sed-Chr2:45005033 1.70E-214 tandem
Sed02g0716 Sed-Chr2:45005033 Sed04g1308 Sed-Chr4:27389475 2.10E-196 wgd
Sed02g0716 Sed-Chr2:45005033 Sed04g2728 Sed-Chr4:39568291 7.20E-141 wgd
Sed02g0716 Sed-Chr2:45005033 Sed07g2417 Sed-Chr7:40031912 4.70E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0716 - - - 0.0