Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0724 ATGATTTGGATTCCTTGTTCCGGAAATTCAAACAGGAAGGTCAAGTCCAAGCAATCGAAGCAGTTGCAATTTCTGAAGAACCGATTTGATCCGAGCAAAGCTGGTTCAGAGAATTCAAAAACAAGTTCCTCCTTCAGTGAAGCCTTTAAAGGTGAAGGATCTGATCATATAAAGGCACAGATATTTTCATTCCGGGATTTGGCAGCAGCTACCAGGAATTTTAGGGCAGATTGTCTTTTGGGCGAGGGAGGATTTGGTAGAGTTTACAAAGGGAATTTGGAAAACATCAATCAGGTCGTGGCTATCAAACAACTTGATCGCAATGGGTTGCAAGGGAACAGGGAGTTTCTTGTTGAAGTTTTGATGTTAAGCCTACTTCATCACCGGAATCTAGTTAATCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGGTATATGAATATATGCCTCTAGGAGCTTTAGATGACCATTTACATGACATTTCACCTGGTACAAATGTACTAGATTGGAATACAAGAATGAAAATAGCTGCTGGGGCAGCACGAGGATTGGAACATTTGCATGACAAAGCTAGCCCGCCAGTAATTTATCGAGATCTAAAAAGTTCCAATATTCTGCTTGATAAAGGTTATCATCCCAAGCTTTCTGATTTTGGATTGGCTAAACTCGGGCCTGTTGGGGACAATACACACGTGTCTACCAGGGTTATGGGAACTTATGGGTACTGTGCTCCCGAATATGCGATGACTGGTCAGTTAACTCTCAAGTCAGATGTGTACAGCTTTGGCGTTGTCCTTCTAGAAATCATAACAGGCAGGAAAGCAATTGATAATTCAAAAGCTGCAGGGGAGCAAAATCTGGTTTCATGGGCAAGACCACTGTTTAATGACCGTCTGAGATTTGCACAAATGGCAGATCCAATGCTTAGGGGCCAATTCCCTTCTAGGGGCTTGTATCAGGCTCTTGCAATTGCAGCAATGTGCATTCAAGTGCAGCCACATATGCGCCCTGCGATCGCCGATGTCGTTACAGCTTTATCTTATCTTGCTTCCCAAAGATATGACCCCAGTACGAACATACCACATGACTCCCCTGCATCTTCCTGTACTCCTCCAAGAAACATCAGAGACACTGTCAAGAAGCTTAATGGTGGTATACGATACGATAGAAATCACACTCGAAGATTATGA 1197 43.02 MIWIPCSGNSNRKVKSKQSKQLQFLKNRFDPSKAGSENSKTSSSFSEAFKGEGSDHIKAQIFSFRDLAAATRNFRADCLLGEGGFGRVYKGNLENINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHRNLVNLIGYCADGDQRLLVYEYMPLGALDDHLHDISPGTNVLDWNTRMKIAAGAARGLEHLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKAAGEQNLVSWARPLFNDRLRFAQMADPMLRGQFPSRGLYQALAIAAMCIQVQPHMRPAIADVVTALSYLASQRYDPSTNIPHDSPASSCTPPRNIRDTVKKLNGGIRYDRNHTRRL 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45055854 45060403 - Sed0024177.1 Sed02g0724 704392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0724 398 SMART serkin_6 74 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0724 398 PANTHER OS07G0668900 PROTEIN 21 363 - -
Sed02g0724 398 ProSiteProfiles Protein kinase domain profile. 74 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0724 398 FunFam Serine/threonine-protein kinase PBS1 47 150 - -
Sed02g0724 398 Pfam Protein tyrosine and serine/threonine kinase 78 346 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0724 398 Gene3D Phosphorylase Kinase; domain 1 48 150 - -
Sed02g0724 398 SUPERFAMILY Protein kinase-like (PK-like) 60 365 IPR011009 -
Sed02g0724 398 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524(InterPro)
Sed02g0724 398 FunFam Serine/threonine-protein kinase PBS1 151 366 - -
Sed02g0724 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0724 398 CDD STKc_IRAK 80 348 - -
Sed02g0724 398 Gene3D Transferase(Phosphotransferase) domain 1 151 365 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0724 Sed-Chr2:45055854 Sed12g0854 Sed-Chr12:5311168 2.30E-148 dispersed
Sed02g0724 Sed-Chr2:45055854 Sed04g2743 Sed-Chr4:39601062 9.70E-160 wgd
Sed02g0724 Sed-Chr2:45055854 Sed05g2905 Sed-Chr5:40025222 9.80E-128 wgd
Sed02g0724 Sed-Chr2:45055854 Sed07g2413 Sed-Chr7:39992296 1.70E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78799 PF00069 Pkinase 2.00E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0724 - - - 0.0