Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0736 | ATGGTTTTCGCAAACCCAATGCTGGATCTTAACCTCGAAGTTGTTTCCTCCGATTCCGTTGAAATGGTTACCGAGGAGTTTCTGCTCTTTCCAGCCACCGGAATGGAAACCGCCGTTAGCTTCAACTCGTCCTCCGTCGTTAACGGCGATCCTTCCGCCAGCACCACCGGCGACGAGGGCTCCTCTTCCAACGCCGACGAGGCTTTTCCGTTCACTTTCGCGGTTCATGAAAGCTTAACGGCGAAATCGCTCTGTATTTCCGATGACCATAACGACCAGACGATGGAGCTCTTCCCGTTAACCGGCGGATTCTCTTCTGGGTTGTGTACTCAGAAGCGGTGGCTGGAGGTTTCTCCGCCGGAATTTGACGGAGGCGCGGCGGAGCGGCGATTAACGACGGCAGTGGTGCAGCCGCCGAAGAGGAAGAACCGGCGAGGACCGAGGTCTCGAAGCTCGCAGTATCGTGGGGTTACGTTTTATCGAAGAACAGGGAGATGGGAATCGCATATTTGGGACAGTGGGAGACAGGTTTATCTGGGTGGTTTTGATACTGCTCATGCTGCTGCTAGAGCTTATGATCGAGCTGCGATTAAGTTTCGTGGGATCGAAGCAGATATTAATTTCAATGTTAATGATTATGATGAAGATATTAAACAGATGAGTAATTTCACCAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCACCGGATTTTCGAGGGGGAGCTCGAAATACAGAGGGGTTACTCTGCATAAATGTGGGCGATGGGAAGCTCGGATGGGCCAGTTTTTGGGGAAGAAGTACATATATCTTGGCCTCTTTGATAATGAGATTGAAGCTGCAAGGGCTTATGACAAGGCTGCCCTTAGATGCAATGGTAAGGAGGCTGTTACTAACTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCTGAGACTGACACTGGAGAGAACAACCAGATGCTTGACCTGAACTTGGCCATAGCTCCCCCAAATCTTTCTGATGTACAAACTGAGAGCATTGGCATGTTTGGCAATGAATTTCAACACTGCTCACACAATGCGCTTGTTGATAGAAGGGCGACGCTTGAAAACTCTGTTTCAGCAGCAATTAGTTCGTCCCAGCCATATGGCTTTGCAGTACCTTCCAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCATCTCCAAGGAAAGAGCAACAGAGATGAGAATGGGGGTTGGATCTTGGGACTGGCAAATCCATGGCCACTCAAATGAAACCTCTTTGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTAGTTCTTCTTCATCTTCATCTGCTGTTGGTGAAATCCATTTTCCAGCTATTTTTCATCACCATGGCAGCAACTTACCCAACTTCTACTACAAGAGTTGA | 1422 | 48.1 | MVFANPMLDLNLEVVSSDSVEMVTEEFLLFPATGMETAVSFNSSSVVNGDPSASTTGDEGSSSNADEAFPFTFAVHESLTAKSLCISDDHNDQTMELFPLTGGFSSGLCTQKRWLEVSPPEFDGGAAERRLTTAVVQPPKRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDSGRQVYLGGFDTAHAAARAYDRAAIKFRGIEADINFNVNDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDNEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETDTGENNQMLDLNLAIAPPNLSDVQTESIGMFGNEFQHCSHNALVDRRATLENSVSAAISSSQPYGFAVPSNYHSSWNVSNSSFFPISKERATEMRMGVGSWDWQIHGHSNETSLPLFSAAASSGFPSSSSSSSSAVGEIHFPAIFHHHGSNLPNFYYKS | 473 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 45089942 | 45093727 | + | Sed0009007.1 | Sed02g0736 | 704404 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0736 | 473 | MobiDBLite | consensus disorder prediction | 43 | 64 | - | - | |
Sed02g0736 | 473 | FunFam | AP2-like ethylene-responsive transcription factor | 152 | 211 | - | - | |
Sed02g0736 | 473 | SUPERFAMILY | DNA-binding domain | 152 | 210 | IPR016177 | GO:0003677(InterPro) | |
Sed02g0736 | 473 | SMART | rav1_2 | 245 | 308 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0736 | 473 | SMART | rav1_2 | 153 | 215 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0736 | 473 | CDD | AP2 | 152 | 211 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0736 | 473 | PRINTS | Ethylene responsive element binding protein signature | 246 | 257 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0736 | 473 | PRINTS | Ethylene responsive element binding protein signature | 284 | 304 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0736 | 473 | SUPERFAMILY | DNA-binding domain | 244 | 303 | IPR016177 | GO:0003677(InterPro) | |
Sed02g0736 | 473 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 83 | 330 | - | - | |
Sed02g0736 | 473 | CDD | AP2 | 244 | 304 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0736 | 473 | ProSiteProfiles | AP2/ERF domain profile. | 153 | 209 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0736 | 473 | Gene3D | AP2/ERF domain | 244 | 303 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0736 | 473 | Gene3D | AP2/ERF domain | 152 | 211 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0736 | 473 | Pfam | AP2 domain | 244 | 293 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0736 | 473 | Pfam | AP2 domain | 153 | 201 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0736 | 473 | ProSiteProfiles | AP2/ERF domain profile. | 245 | 302 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0736 | Sed-Chr2:45089942 | Sed03g1992 | Sed-Chr3:13831234 | 1.50E-95 | dispersed | |
Sed02g0736 | Sed-Chr2:45089942 | Sed04g1315 | Sed-Chr4:27502844 | 3.40E-204 | wgd | |
Sed02g0736 | Sed-Chr2:45089942 | Sed04g2747 | Sed-Chr4:39658370 | 4.70E-60 | wgd | |
Sed02g0736 | Sed-Chr2:45089942 | Sed05g2900 | Sed-Chr5:39971405 | 1.40E-101 | wgd | |
Sed02g0736 | Sed-Chr2:45089942 | Sed07g2411 | Sed-Chr7:39948050 | 5.50E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37560 | PF00847 | AP2 | 4.20E-09 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0736 | K09284 | - | csv:101211242 | 703.36 |