Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0736 ATGGTTTTCGCAAACCCAATGCTGGATCTTAACCTCGAAGTTGTTTCCTCCGATTCCGTTGAAATGGTTACCGAGGAGTTTCTGCTCTTTCCAGCCACCGGAATGGAAACCGCCGTTAGCTTCAACTCGTCCTCCGTCGTTAACGGCGATCCTTCCGCCAGCACCACCGGCGACGAGGGCTCCTCTTCCAACGCCGACGAGGCTTTTCCGTTCACTTTCGCGGTTCATGAAAGCTTAACGGCGAAATCGCTCTGTATTTCCGATGACCATAACGACCAGACGATGGAGCTCTTCCCGTTAACCGGCGGATTCTCTTCTGGGTTGTGTACTCAGAAGCGGTGGCTGGAGGTTTCTCCGCCGGAATTTGACGGAGGCGCGGCGGAGCGGCGATTAACGACGGCAGTGGTGCAGCCGCCGAAGAGGAAGAACCGGCGAGGACCGAGGTCTCGAAGCTCGCAGTATCGTGGGGTTACGTTTTATCGAAGAACAGGGAGATGGGAATCGCATATTTGGGACAGTGGGAGACAGGTTTATCTGGGTGGTTTTGATACTGCTCATGCTGCTGCTAGAGCTTATGATCGAGCTGCGATTAAGTTTCGTGGGATCGAAGCAGATATTAATTTCAATGTTAATGATTATGATGAAGATATTAAACAGATGAGTAATTTCACCAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCACCGGATTTTCGAGGGGGAGCTCGAAATACAGAGGGGTTACTCTGCATAAATGTGGGCGATGGGAAGCTCGGATGGGCCAGTTTTTGGGGAAGAAGTACATATATCTTGGCCTCTTTGATAATGAGATTGAAGCTGCAAGGGCTTATGACAAGGCTGCCCTTAGATGCAATGGTAAGGAGGCTGTTACTAACTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCTGAGACTGACACTGGAGAGAACAACCAGATGCTTGACCTGAACTTGGCCATAGCTCCCCCAAATCTTTCTGATGTACAAACTGAGAGCATTGGCATGTTTGGCAATGAATTTCAACACTGCTCACACAATGCGCTTGTTGATAGAAGGGCGACGCTTGAAAACTCTGTTTCAGCAGCAATTAGTTCGTCCCAGCCATATGGCTTTGCAGTACCTTCCAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCATCTCCAAGGAAAGAGCAACAGAGATGAGAATGGGGGTTGGATCTTGGGACTGGCAAATCCATGGCCACTCAAATGAAACCTCTTTGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTAGTTCTTCTTCATCTTCATCTGCTGTTGGTGAAATCCATTTTCCAGCTATTTTTCATCACCATGGCAGCAACTTACCCAACTTCTACTACAAGAGTTGA 1422 48.1 MVFANPMLDLNLEVVSSDSVEMVTEEFLLFPATGMETAVSFNSSSVVNGDPSASTTGDEGSSSNADEAFPFTFAVHESLTAKSLCISDDHNDQTMELFPLTGGFSSGLCTQKRWLEVSPPEFDGGAAERRLTTAVVQPPKRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDSGRQVYLGGFDTAHAAARAYDRAAIKFRGIEADINFNVNDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDNEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETDTGENNQMLDLNLAIAPPNLSDVQTESIGMFGNEFQHCSHNALVDRRATLENSVSAAISSSQPYGFAVPSNYHSSWNVSNSSFFPISKERATEMRMGVGSWDWQIHGHSNETSLPLFSAAASSGFPSSSSSSSSAVGEIHFPAIFHHHGSNLPNFYYKS 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45089942 45093727 + Sed0009007.1 Sed02g0736 704404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0736 473 MobiDBLite consensus disorder prediction 43 64 - -
Sed02g0736 473 FunFam AP2-like ethylene-responsive transcription factor 152 211 - -
Sed02g0736 473 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677(InterPro)
Sed02g0736 473 SMART rav1_2 245 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0736 473 SMART rav1_2 153 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0736 473 CDD AP2 152 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0736 473 PRINTS Ethylene responsive element binding protein signature 246 257 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0736 473 PRINTS Ethylene responsive element binding protein signature 284 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0736 473 SUPERFAMILY DNA-binding domain 244 303 IPR016177 GO:0003677(InterPro)
Sed02g0736 473 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 83 330 - -
Sed02g0736 473 CDD AP2 244 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0736 473 ProSiteProfiles AP2/ERF domain profile. 153 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0736 473 Gene3D AP2/ERF domain 244 303 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0736 473 Gene3D AP2/ERF domain 152 211 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0736 473 Pfam AP2 domain 244 293 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0736 473 Pfam AP2 domain 153 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0736 473 ProSiteProfiles AP2/ERF domain profile. 245 302 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0736 Sed-Chr2:45089942 Sed03g1992 Sed-Chr3:13831234 1.50E-95 dispersed
Sed02g0736 Sed-Chr2:45089942 Sed04g1315 Sed-Chr4:27502844 3.40E-204 wgd
Sed02g0736 Sed-Chr2:45089942 Sed04g2747 Sed-Chr4:39658370 4.70E-60 wgd
Sed02g0736 Sed-Chr2:45089942 Sed05g2900 Sed-Chr5:39971405 1.40E-101 wgd
Sed02g0736 Sed-Chr2:45089942 Sed07g2411 Sed-Chr7:39948050 5.50E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37560 PF00847 AP2 4.20E-09 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0736 K09284 - csv:101211242 703.36