Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0738 ATGAGTATTTCTTTTCAATTTTTGTCATCGCGCTTGGCGAAAATGGAGTCTAAGCTTCTGCTTCTCTTTCTTCTCGTTCTTCTGGATGTATCCATTGCTCAGATGCCAGGTTTTGTAAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACTGATGATATTGGTCTGGAGTGGGTTCCCGATACTCAAGTTCGTTTTGGAGAAGCAATTAACATTTCTGTTGCAAATAAAACAAGGAAGCAATACATGTCTTTAAGACATTTCCCTGCTGATTCCAGGAAGTACTGTTACTCACTCAATGTCACCAGTAGAACACGTTATCTTATCCGAGCGACGTTTCTGTATGGTAACTTCGACAACAACAATGTGTATCCAAAATTCGACATTTCCCTAGGGGCAACTCACTGGTCAACAATTGTCATATCTGATGCCAACACGGTAAAGGTTCGGGAGCTTATATTTCTGGCTTCAACTCCTACTGTGAGTGTTTGTTTGTCAAATGCTACGACTGGGCAGCCATTCATATCGACGCTTGAGCTTCGACAATTTAATGGCTCTAGCTACTATACTGAATTTGAGGATCGGTTTTACCTAAGTGTCTCAGCAAGGATCAATTTTGGAGCAGAATCTGAAGCTCCAATAAGGTTTCCTGATGATCCATTTGACCGGATATGGGAGTCTGATTCTGCGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACTGAAAAAGTTTCCACTAAAATGCCAATCGATGTAGGTAGAGATGAAAGACCACCTCAAAAAGTTATGCAGACAGCTGTAGTTGGTCGAAATGGTTCATTAACATACCGGTTGAATTTGGATGGTTTTCCTGGCTTTGGATGGGCAGTCACCTACTTTGCCGAAATTGAAGACTTGGCTCCAACTGATACGAGAAAATTCAGGCTTGTACTTCCCGGCATGCCCGAAATCAGCAAAGCAGTAGTCAACATTGAAGAAAATGCTCAAGGGCAATATCGGCTTTATGAGCCTGGTTTTACCAACATAACCTTCCCTTTTGTATTAGCTTTTAAGTTTGGGAAAACTTCAGATTCTGTGTTGGGGCCTCTATTAAACGCTATGGAGATTAACAAGTATCTAGAAAAAAGTGATGGTTCTCTGGATGGTGAAGTTATTGTTAGTGTAGTTTCAAAATTGTCATCATTAGATTGGGATGAAGGGGGTGATCCATGCAGGCCAGTTCCTTGGTCGTGGTTGCAATGTAACTCTGATCCACAGCCAAGAATAGTTAAAATTTCATTGTCCAAAAAGAATTTGACGGGGAACGTCCCTACAGACCTTGCAAAGCTGAGCGGTTTAGTTGAATTGTGGCTTGATGGAAATTCATTTGTTGGTCCTATACCCGATTTTACTGGCTGTGTGAACTTGAAAATCATCCATCTTGAGAACAACCAGTTGACGGGAGAGTTGCCTTCCTCTTTATTAAATCTTCCAAGTTTACGGGAGCTGTATGTGCAGAATAACCTGTTATCTGGAACAGTGCCTCCCGGACTTTTAAATGAAAACCTAGTTTTAATCTATTCTGGAAATATTAATCTTCACGAAGGGGGGAAAAAGAACCAGGTTTTTATCATTGTGGGTTGTGTAATCGGGGCTATTGTCCTGGTATTGGCAATTGTGTTATCTTGCTACTTTTTGCAAAAAGGAAGAAAAAAACGTCGTGAACAAGATCTACCTGAAGAATCCATGCATGCCCAAAGATTTGCCCCTTCAAAGGGTGATGTCCCCAAGGAAACCGCACATTGCTTCAGTCTTAGTGAAATTGAAGAAGCAACAAGACGTTTGGAAAGAAAAATTGGCTCTGGAGGTTTTGGTGTTGTATACTACGGGAAATTAAATGATGGAAAAGAAATTGCTGTTAAAGTCTTAATCAATGATACCTTTCAGGGAAAGCGAGAATTTACCAATGAGGTGACTCTTCTTTCAAGGATCCATCATAGAAACCTTGTACAATATCTTGGATATTGTCAAGATCCAAAAGTTGAAAAAAGTATGCTTGTCTATGAGTTCATGCATAATGGAACTCTCAAGGAACATCTTTATGGTCCACTAACACGTGAAAAAACTATCAGTTGGATGAAGCGCCTCGAGATTGCCGAAGATGCAGCTAGAGGGATTGAATACCTTCACACAGGGTGTATACCAGCAATTATTCATAGGGACTTGAAAAGCAGTAATATTCTTCTTGACAGGCACATGAGAGCAAAGGTTTCAGATTTTGGTCTTTCGAAGCTTGCGGTGGATGGTGTCTCCCACGTATCCAGCATAGTTCGGGGAACTGTTGGATATTTGGATCCAGAGTATTATATCTCACAGCAGTTGACAGACAAGAGCGATGTATATAGCTTTGGCGTTATTCTTCTCGAGTTGATATCTGGTCAAGAAGCTATATCGAATGTCAACTTTGGTGTCAATTGCCGCAACATCGTCCAGTGGGCAAAAGTGCACATCGAGAGCGGGGACATTCAAGGGATCATCGATCCTTCGCTACGCGACGACTATGACATTCAATCGATGTGGAAAATCGCAGAGAAAGCGTTGATGTGTGTCCAGCCACATGGGCACATGAGACCATCCATATCTGAAGTGCTCAAGGAGATCCAGGATTCAATCTTGATTGAAAGGGAACATCTTGCAAGAGAAGGTAACTCTGACGAAATTTCTAGAAACTCAGCACATTCTATGAATATGGGATCTCTTGATTTGTGTGGAAACGAAAACTACGTGTCGTTTGACGAATCCGTTGCTCGACCTACTGCAAGGTAG 2808 41.52 MSISFQFLSSRLAKMESKLLLLFLLVLLDVSIAQMPGFVSLDCGGQESFTDDIGLEWVPDTQVRFGEAINISVANKTRKQYMSLRHFPADSRKYCYSLNVTSRTRYLIRATFLYGNFDNNNVYPKFDISLGATHWSTIVISDANTVKVRELIFLASTPTVSVCLSNATTGQPFISTLELRQFNGSSYYTEFEDRFYLSVSARINFGAESEAPIRFPDDPFDRIWESDSARKANYLVDVAAGTEKVSTKMPIDVGRDERPPQKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLAPTDTRKFRLVLPGMPEISKAVVNIEENAQGQYRLYEPGFTNITFPFVLAFKFGKTSDSVLGPLLNAMEINKYLEKSDGSLDGEVIVSVVSKLSSLDWDEGGDPCRPVPWSWLQCNSDPQPRIVKISLSKKNLTGNVPTDLAKLSGLVELWLDGNSFVGPIPDFTGCVNLKIIHLENNQLTGELPSSLLNLPSLRELYVQNNLLSGTVPPGLLNENLVLIYSGNINLHEGGKKNQVFIIVGCVIGAIVLVLAIVLSCYFLQKGRKKRREQDLPEESMHAQRFAPSKGDVPKETAHCFSLSEIEEATRRLERKIGSGGFGVVYYGKLNDGKEIAVKVLINDTFQGKREFTNEVTLLSRIHHRNLVQYLGYCQDPKVEKSMLVYEFMHNGTLKEHLYGPLTREKTISWMKRLEIAEDAARGIEYLHTGCIPAIIHRDLKSSNILLDRHMRAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNVNFGVNCRNIVQWAKVHIESGDIQGIIDPSLRDDYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDSILIEREHLAREGNSDEISRNSAHSMNMGSLDLCGNENYVSFDESVARPTAR 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45114814 45147860 + Sed0019041.1 Sed02g0738 704406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0738 935 ProSiteProfiles Protein kinase domain profile. 607 886 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0738 935 Gene3D Transferase(Phosphotransferase) domain 1 685 904 - -
Sed02g0738 935 MobiDBLite consensus disorder prediction 569 589 - -
Sed02g0738 935 ProSitePatterns Protein kinases ATP-binding region signature. 613 635 IPR017441 GO:0005524(InterPro)
Sed02g0738 935 SMART serkin_6 607 886 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0738 935 FunFam Leucine-rich repeat receptor-like protein kinase 584 684 - -
Sed02g0738 935 Gene3D Phosphorylase Kinase; domain 1 583 684 - -
Sed02g0738 935 PANTHER OS07G0107800 PROTEIN-RELATED 468 889 - -
Sed02g0738 935 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 685 893 - -
Sed02g0738 935 SUPERFAMILY Protein kinase-like (PK-like) 596 881 IPR011009 -
Sed02g0738 935 Pfam Malectin-like domain 41 371 IPR024788 -
Sed02g0738 935 Gene3D Ribonuclease Inhibitor 384 536 IPR032675 -
Sed02g0738 935 SUPERFAMILY L domain-like 406 526 - -
Sed02g0738 935 Pfam Leucine Rich Repeat 493 512 IPR001611 GO:0005515(InterPro)
Sed02g0738 935 Pfam Leucine Rich Repeat 469 491 IPR001611 GO:0005515(InterPro)
Sed02g0738 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 731 743 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0738 935 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 420 517 - -
Sed02g0738 935 Pfam Protein tyrosine and serine/threonine kinase 609 814 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0738 935 CDD STKc_IRAK 613 882 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0738 Sed-Chr2:45114814 Sed04g0541 Sed-Chr4:4018226 1.40E-238 dispersed
Sed07g0155 Sed-Chr7:1400263 Sed02g0738 Sed-Chr2:45114814 1.20E-107 transposed
Sed02g0738 Sed-Chr2:45114814 Sed04g1316 Sed-Chr4:27534978 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78800 PF12819 Malectin_like 5.80E-76 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0738 - - - 0.0