Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0739 ATGGCTGATGCTCCGGCGAGCCCCGGCGGTGGAAGCCATGAAAGCGGCGACCATAGTCCGAGGTCGAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCGAACATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAACGGCAAGATTGCTAAGGACGCTAAGGAGACCGTACAGGAATGTGTGTCGGAGTTCATCAGTTTTGTCACTAGCGAGGCCAGTGACAAATGCCAGAGAGAAAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCAATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACCAAATACAGAGAGACTGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATTCATCTTCTAAGAAAGAAGCTCTTCCAACCCCTAGTGCTCAGATTGCTCTTCATCAAGGGTTTTCACAAGGAGTTAATTATGGAAATTCTCAATCACAAGGCCAGCATCTGATGGTTCCTATGCAAGGCACAGACTAA 522 47.51 MADAPASPGGGSHESGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDSSSKKEALPTPSAQIALHQGFSQGVNYGNSQSQGQHLMVPMQGTD 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45156867 45161483 + Sed0002398.1 Sed02g0739 704407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0739 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 152 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Sed02g0739 173 FunFam Nuclear transcription factor Y subunit B-3 19 142 - -
Sed02g0739 173 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0739 173 MobiDBLite consensus disorder prediction 133 173 - -
Sed02g0739 173 MobiDBLite consensus disorder prediction 1 27 - -
Sed02g0739 173 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Sed02g0739 173 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Sed02g0739 173 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Sed02g0739 173 SUPERFAMILY Histone-fold 27 132 IPR009072 GO:0046982(InterPro)
Sed02g0739 173 MobiDBLite consensus disorder prediction 115 173 - -
Sed02g0739 173 Gene3D Histone, subunit A 16 149 IPR009072 GO:0046982(InterPro)
Sed02g0739 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0739 Sed-Chr2:45156867 Sed04g1327 Sed-Chr4:27612408 7.10E-83 dispersed
Sed02g0739 Sed-Chr2:45156867 Sed02g0740 Sed-Chr2:45156867 2.10E-87 tandem
Sed02g0739 Sed-Chr2:45156867 Sed04g2752 Sed-Chr4:39682936 3.30E-56 wgd
Sed02g0739 Sed-Chr2:45156867 Sed07g2408 Sed-Chr7:39930068 4.70E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37561 PF00808 CBFD_NFYB_HMF 8.30E-28 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0739 K08065 - csv:101212699 297.36