Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0740 | ATGGCTGATGCTCCGGCGAGCCCCGGCGGTGGAAGCCATGAAAGCGGCGACCATAGTCCGAGGTCGAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCGAACATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAACGGCAAGATTGCTAAGGACGCTAAGGAGACCGTACAGGAATGTGTGTCGGAGTTCATCAGTTTTGTCACTAGCGAGGCCAGTGACAAATGCCAGAGAGAAAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCAATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACCAAATACAGAGAGACTGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATTCATCTTCTAAGAAAGAAGCTCTTCCAACCCCTAGTGCTCAGATTGCTCTTCATCAAGGGTTTTCACAAGGAGTTAATTATGGAAATTCTCAAGTACTCTTTCTCGCTCTTTCTTTTTCTCTCACACTCAAGAAAACACCCATGCATGCACTTTTGTTGAAGATACCACATCAGAAAAATGCAGACCTCTAA | 576 | 46.01 | MADAPASPGGGSHESGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDSSSKKEALPTPSAQIALHQGFSQGVNYGNSQVLFLALSFSLTLKKTPMHALLLKIPHQKNADL | 191 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 45156867 | 45161483 | + | Sed0002398.2 | Sed02g0740 | 704408 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0740 | 191 | Gene3D | Histone, subunit A | 16 | 148 | IPR009072 | GO:0046982(InterPro) | |
Sed02g0740 | 191 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 30 | 94 | IPR003958 | - | |
Sed02g0740 | 191 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 61 | 77 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g0740 | 191 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Sed02g0740 | 191 | PRINTS | CCAAT-binding transcription factor subunit A signature | 77 | 95 | - | - | |
Sed02g0740 | 191 | PRINTS | CCAAT-binding transcription factor subunit A signature | 96 | 114 | - | - | |
Sed02g0740 | 191 | PRINTS | CCAAT-binding transcription factor subunit A signature | 58 | 76 | - | - | |
Sed02g0740 | 191 | FunFam | Nuclear transcription factor Y subunit B-3 | 19 | 142 | - | - | |
Sed02g0740 | 191 | MobiDBLite | consensus disorder prediction | 117 | 137 | - | - | |
Sed02g0740 | 191 | SUPERFAMILY | Histone-fold | 27 | 132 | IPR009072 | GO:0046982(InterPro) | |
Sed02g0740 | 191 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 17 | 140 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0740 | Sed-Chr2:45156867 | Sed04g1330 | Sed-Chr4:27612408 | 2.50E-81 | dispersed | |
Sed02g0739 | Sed-Chr2:45156867 | Sed02g0740 | Sed-Chr2:45156867 | 2.10E-87 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37562 | PF00808 | CBFD_NFYB_HMF | 1.00E-27 | CL0012 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0740 | K08065 | - | gmx:100798667 | 271.552 |