Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0741 ATGGAGCAATTGTTTTCAGATTCCGGCGTAACTTGCGATATCTTGGATTTGTACTTCCCCGGCACCGTCGTCACCGTCGAAAATGGATGGCTGAAGCTCATTTCTCAGCTCATTTTCTTCTTTTCTTCTCCGGCAGGTCGGCTTCTCGCTTCACAGGCGATCGATGATGGTCGAGGCAGCTTTATTTTGTCAGTCGATTTTCAACAGTTCCGGAAGATTTGTGATCAACATGAATTTTACCTAATGTTAGAGGAAAATCCTAAAGTTGCACTCCAATGTATGAGTGCTGCACTTCACCAGATTCTGAGGGCCAAATGCGCGCACAATTTAGAGGATGTTGCAAAAATTCTTATTCGGTTGTACAACTATTCAGAATCTATGCTTGCTTTGAAGAATTTGAAGGCAGCATACATTGACAAGCTTGTATCGGTGCGCGGTACCGTTGTTAAAGTTAGCACTGTCAAGCCTTTGGTGGTGCAAATGAGCTTTGATTGTGCGAAGTGTAAAAGCAATATCACACGAATCTTTCCTGATGGTAAGCTTTCACCTCCATCATTTTGTGAGTTGGATGGGTGTAAAAGCAAAACATTCAATCCCATTCGATCTACAGCTGAAGCAATCGACTTTCAAAAAATACGGTTACAGGAACTCACTAAGGCTGATGACCATGAAGAAGGCAGGGTACCTAGAACTGTAGAATGTGAGCTCACTGAAGATCTTGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGGATTGTTAAAGTAATAAATAATTACATGGATATTGGAGGAGGAAAGTCGAAGAGCAAAAATCAAGGATTTTACTATTTGTATCTGGAAGCTGTTTCAATAAAAAATTCTAAGTCACAATCTACTCCTGAGGAGTTGCAGGATTCTAACTCAGATCCAAGAGCAACCGAGTTGCTTGATTTATTCTCATTCTCTCAAAGAGATTTGGAATTTGTTGTGAAATTCTCTGGGGAATATGGTTCAGATGTATTCCGTCAAATACTTCAATCTATATGTCCATCCATTTATGGACATGAACTTGTTAAAGCGGGAATAACTCTAGCACTATTTGGTGGTGTACGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATATTCATGTCATTGTTGTTGGTGATCCTGGACTTGGCAAGAGTCAACTACTGCAAGCGGCTTCATCTATTTCTCCACGTGGAATTTATGTTTGTGGTAATGCAACAACCAAGGCGGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACAAATGACTATGCTTTTGAGGCTGGGGCTATGGTACTTGCGGATGGTGGATTATGCTGTATAGATGAGTTCGATAAAATGTCGGCAGAACATCAGGCCCTACTTGAAGCCATGGAACAACAATGTGTATCTATTGCAAAAGCTGGACTTGTAGCAAGTCTATCAGCACGCACTTCTGTTTTAGCTGCAGCTAATCCTGTTGGTGGTCATTACAATCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGTGCTGCTCTTCTCTCAAGATTCGATTTAGTTTTTATATTGCTGGATAAACCTGACGAATTTCTGGATAAAAGAGTCTCAGAGCACATCATGTCGCTTCATGCTGGCTCTGGGGAACGAGCCGCTGCAGCAAAAAGACTACATATGTCTCCTTTGGCTTTAAAAAATGTGGCAATGGAGAATGATGGAAAAGGAAATTCTTGTTCAAAACGCGAGTCCTTAGTTTCAAGACTGAGATTGGATCGAGCGAAAGATGGGGATTTTGTACCATTGCCTGGCCAACTTCTTCGAAAGTATATAGCCTATGCAAGAACTTTTGTGTTTCCGAGGATGTCAAAGGCCGCAGCAGACATCTTGCAGAAGTTTTACTTACGACTGCGTGACCGGAGTACATCAACGGATGGTACGCCAATTACAGCAAGGCAACTGGAAAGTCTGGTGAGGCTGGCAGAAGCTCGAGCACGGGTAGACCTCAGGGAAGAGATTACAGTGCAAGATGCCATGGATGTGGTAGAAATAATGAAGGAATCCCTATATGAAAAGTATGTAGATGAACATGGGGTTCTGGATTTCGGTCGAAGTGGAGGAATGAGTCAACAAAAAGAAGCCAAGCGATTTCTGAGTGCCCTCAACAAGCAATCAGAGTTGCAGAAGAAAGATTGTTTCTCCATCTCGGAAATATATATCTTGGCAGATAAGATTGGTTTACGAGTACCCGACATTGATACCTTCATAGAAAATCTTAACAGTGTTGGATATTTGCTTAAGAAGGGGCCGAAGACATACCAGGTGCTGTCGTCATCTTACACCAGTCAATCAACAAGATCTAGAGGATAA 2376 42.21 MEQLFSDSGVTCDILDLYFPGTVVTVENGWLKLISQLIFFFSSPAGRLLASQAIDDGRGSFILSVDFQQFRKICDQHEFYLMLEENPKVALQCMSAALHQILRAKCAHNLEDVAKILIRLYNYSESMLALKNLKAAYIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKLSPPSFCELDGCKSKTFNPIRSTAEAIDFQKIRLQELTKADDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIVKVINNYMDIGGGKSKSKNQGFYYLYLEAVSIKNSKSQSTPEELQDSNSDPRATELLDLFSFSQRDLEFVVKFSGEYGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQLLQAASSISPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDEFLDKRVSEHIMSLHAGSGERAAAAKRLHMSPLALKNVAMENDGKGNSCSKRESLVSRLRLDRAKDGDFVPLPGQLLRKYIAYARTFVFPRMSKAAADILQKFYLRLRDRSTSTDGTPITARQLESLVRLAEARARVDLREEITVQDAMDVVEIMKESLYEKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSELQKKDCFSISEIYILADKIGLRVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYTSQSTRSRG 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45163252 45171168 - Sed0028064.1 Sed02g0741 704409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0741 791 CDD MCM8_WHD 713 778 - -
Sed02g0741 791 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 525 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed02g0741 791 PRINTS Mini-chromosome maintenance (MCM) protein family signature 490 502 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed02g0741 791 PRINTS Mini-chromosome maintenance (MCM) protein family signature 379 394 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed02g0741 791 PRINTS Mini-chromosome maintenance (MCM) protein family signature 439 453 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed02g0741 791 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 479 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed02g0741 791 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 62 775 IPR031327 GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Sed02g0741 791 Pfam MCM AAA-lid domain 608 691 IPR041562 -
Sed02g0741 791 Pfam MCM OB domain 130 259 IPR033762 -
Sed02g0741 791 Gene3D - 157 207 - -
Sed02g0741 791 ProSiteProfiles MCM family domain profile. 336 543 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed02g0741 791 CDD MCM8 340 690 - -
Sed02g0741 791 SMART AAA_5 380 532 IPR003593 GO:0016887(InterPro)
Sed02g0741 791 FunFam DNA helicase MCM8 isoform X1 157 208 - -
Sed02g0741 791 Gene3D - 314 700 IPR027417 -
Sed02g0741 791 SMART mcm 126 692 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed02g0741 791 Coils Coil 451 471 - -
Sed02g0741 791 Gene3D - 130 260 IPR012340 -
Sed02g0741 791 Pfam MCM P-loop domain 334 547 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Sed02g0741 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 697 IPR027417 -
Sed02g0741 791 SUPERFAMILY Nucleic acid-binding proteins 59 260 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0741 Sed-Chr2:45163252 Sed04g3910 Sed-Chr4:47255122 1.40E-77 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0741 K10737 - csv:101211972 1403.27