Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0764 ATGGCCGAATCGTTGGACCACGTTCCTCAACAGAGCCGCCGCGACAAGCTCCGTGAACAACCGGACCGGTCCACAAATTTCGTCCCATTTTACGATCCCAGCTCCGATGTGATAAACCCTCTTTTCTCCGGCCACCGGTTCCAGTTCCACCACCCGTTTTTCGACCCGCAAATCCAAGCCGCCCATCTCATACCCGAACCCAACAACAACAACCCGCTTCTCTTCGGCTCCGACCCCATCGCCGCCGCGTTCAAGCCGGAGCCGCTCTCTTTAACCCTGGCCTCCCACCCGTATCTCGCCGTCGGCGGCGGCGGCGGCTCCGGCGTTGCGAAACCGTTGGTGGTTCCCCTGGGCCCGTTTACTGGGTACGCTTCCATTTTGAAGGGGTCGAGGTTTTTGAAGCCGGCTCAGCAGTTGCTGGAGGAGATTTGTGATGTGGTTGGCCTTCAAGGGATTGATTCTGGAATTGTTGATCATTCTGAGAGTTTGAGCGATTCTGGAATTGTGGATCATTCTCATGTTTCTGCCCCTGTTCATAAATCTACCCTTGTTTCTATGCTTGATGAGGTTTACAGAAAATATAAGCAATACTATAATCAGATCCAGGAAGTGATGACATCGTTCGAGTACATCTCCGGGCTTGGGAATGCGGCGCCATACGCCAACCAGGCTATAAAAGTCATGTACAAACATTTCCAGTGCTTAAAAAATGCAATTCTAGACCAACTTCAATTCAATAAAAAGACTCATGGGGACTTCTGTCAAAGATCTGATCAGAACACTGGATTTCTCGACCATCAGCCTGTTTGGCGACCCCAACGAGGGCTACCCGAAAGAGCAGTGACGGTTCTCCGTGCTTGGTTGTTCGAACATTTCTTGCATCCTTATCCTTCTGATACAGACAAGCTTATGTTGGCTAAGCAGACTGGTCTGTCTCGTAGTCAGGTATCAAACTGGTTCATCAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTTGAAGAAATATACATGCTTGAAACAAAGCAAACACAGAAAAAATTGCAAAGAGAGGATCGAAACGGCATCAGGGCAAACAACCACCATCCCTCGAACACACTCGCAATGGATAATCCCTCTGCATCTGCTCAACATATTCAAGACACTCCTTCCAAACGCACCCGAAACGAAGTTCACAACATGGCAATGGGAAATCAAGACGAGTCCTTGACTGCATCTTACAACTTGTCGAGCCATCCCCATGTGGGCGCTAACACAAACATGGCAGGCAACAACAGTGGAGTTTCCTTAACTCTAGGTCTTCACCAAAACAACGGCATCGGTGGCTTTTCGGAACCCTTCCCTGTTGGGCTCCCCGTTGCTGCCACCCAGCGTTTCGGCCTTGGAATCCAAGCAAACAGCGACGGGTACGTAATGGGTGGACATTTTGGTAGAGATGTGCTTGGAGGTCAGCTGCTACATGACTTTGTAGGCTGA 1473 50.03 MAESLDHVPQQSRRDKLREQPDRSTNFVPFYDPSSDVINPLFSGHRFQFHHPFFDPQIQAAHLIPEPNNNNPLLFGSDPIAAAFKPEPLSLTLASHPYLAVGGGGGSGVAKPLVVPLGPFTGYASILKGSRFLKPAQQLLEEICDVVGLQGIDSGIVDHSESLSDSGIVDHSHVSAPVHKSTLVSMLDEVYRKYKQYYNQIQEVMTSFEYISGLGNAAPYANQAIKVMYKHFQCLKNAILDQLQFNKKTHGDFCQRSDQNTGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQTQKKLQREDRNGIRANNHHPSNTLAMDNPSASAQHIQDTPSKRTRNEVHNMAMGNQDESLTASYNLSSHPHVGANTNMAGNNSGVSLTLGLHQNNGIGGFSEPFPVGLPVAATQRFGLGIQANSDGYVMGGHFGRDVLGGQLLHDFVG 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45347735 45351279 - Sed0010674.1 Sed02g0764 704432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0764 490 SUPERFAMILY Homeodomain-like 272 337 IPR009057 -
Sed02g0764 490 MobiDBLite consensus disorder prediction 1 29 - -
Sed02g0764 490 ProSiteProfiles 'Homeobox' domain profile. 267 330 IPR001356 GO:0003677(InterPro)
Sed02g0764 490 MobiDBLite consensus disorder prediction 354 386 - -
Sed02g0764 490 FunFam BEL1-like homeodomain protein 9 273 335 - -
Sed02g0764 490 Pfam Associated with HOX 126 239 IPR006563 -
Sed02g0764 490 Pfam Homeobox KN domain 287 326 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed02g0764 490 SMART HOX_1 270 334 IPR001356 GO:0003677(InterPro)
Sed02g0764 490 MobiDBLite consensus disorder prediction 1 22 - -
Sed02g0764 490 MobiDBLite consensus disorder prediction 358 381 - -
Sed02g0764 490 Gene3D - 273 335 - -
Sed02g0764 490 CDD homeodomain 270 331 IPR001356 GO:0003677(InterPro)
Sed02g0764 490 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 92 374 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed02g0764 490 SMART prehox3 121 241 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0764 Sed-Chr2:45347735 Sed14g0506 Sed-Chr14:5016049 1.00E-94 dispersed
Sed02g0764 Sed-Chr2:45347735 Sed04g1226 Sed-Chr4:25799266 3.00E-203 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37564 PF07526 POX 1.20E-28 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0764 - - - 0.0