Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0773 ATGGCGCCTCTCGAAGTTTCCCAGTCCGACATTGATTTGGAGTTGGGGAATCATCGTGGGTCTGTTAGTGGTAGTGAGTTGAGCGCCGATTGTAGCGTTTACTTCTCCGATGCGGAGGAGGGTTCGTGTTATTCTCGGTTTTACTCCACGAATGGCGGTTCTTATGATGAGTTTAGATTTGCTTTCGTTTCTCAGTCGGCGGGTTTGGATTCACCTCGGCGAGTTTCGTCGGCGTCGGATCGGTCTGTGGAGGCTGAGGATGAACATGGGGTTGATGAAATCAAGGTGCATTTCGCTAAAGTGGAAAGGGATTGCAGGATTTGCCATTTGGGGTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAATCGAATTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCATAAGCATTGTGCTGAAACGTGGTTCAAAATTAAAGGAAACAAGACTTGTGAGATTTGTCATTCCATAGCGCTAAACATTCTCGGACCCAATGGGGTTGAGTCAACTGAGCAATCTAGCGAATCCAACAATGCCTCCTCGACAACTACAATTGCTGCATCAATTCCCTCATCAGAGAGCCAAAGCTTCTGGCTTGGCCATCGGATTCTAAATTTTCTCCTTGCATGTATGGTGCTTGCATTTGTTATATCTTGGCTCTTCCACTTTAACGTGTCATTGTAA 690 46.52 MAPLEVSQSDIDLELGNHRGSVSGSELSADCSVYFSDAEEGSCYSRFYSTNGGSYDEFRFAFVSQSAGLDSPRRVSSASDRSVEAEDEHGVDEIKVHFAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIALNILGPNGVESTEQSSESNNASSTTTIAASIPSSESQSFWLGHRILNFLLACMVLAFVISWLFHFNVSL 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45443921 45446602 - Sed0002540.1 Sed02g0773 704441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0773 229 SMART ringv_2 104 157 IPR011016 GO:0008270(InterPro)
Sed02g0773 229 CDD RING_CH-C4HC3_MARCH 105 157 - -
Sed02g0773 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 163 IPR013083 -
Sed02g0773 229 PANTHER ZINC FINGER, RING-CH-TYPE 37 227 - -
Sed02g0773 229 Pfam RING-variant domain 105 156 IPR011016 GO:0008270(InterPro)
Sed02g0773 229 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270(InterPro)
Sed02g0773 229 SUPERFAMILY RING/U-box 102 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0773 Sed-Chr2:45443921 Sed11g2183 Sed-Chr11:35549506 3.90E-52 dispersed
Sed02g0773 Sed-Chr2:45443921 Sed04g1211 Sed-Chr4:25097352 2.30E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0773 - - - 0.0