Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0773 | ATGGCGCCTCTCGAAGTTTCCCAGTCCGACATTGATTTGGAGTTGGGGAATCATCGTGGGTCTGTTAGTGGTAGTGAGTTGAGCGCCGATTGTAGCGTTTACTTCTCCGATGCGGAGGAGGGTTCGTGTTATTCTCGGTTTTACTCCACGAATGGCGGTTCTTATGATGAGTTTAGATTTGCTTTCGTTTCTCAGTCGGCGGGTTTGGATTCACCTCGGCGAGTTTCGTCGGCGTCGGATCGGTCTGTGGAGGCTGAGGATGAACATGGGGTTGATGAAATCAAGGTGCATTTCGCTAAAGTGGAAAGGGATTGCAGGATTTGCCATTTGGGGTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAATCGAATTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCATAAGCATTGTGCTGAAACGTGGTTCAAAATTAAAGGAAACAAGACTTGTGAGATTTGTCATTCCATAGCGCTAAACATTCTCGGACCCAATGGGGTTGAGTCAACTGAGCAATCTAGCGAATCCAACAATGCCTCCTCGACAACTACAATTGCTGCATCAATTCCCTCATCAGAGAGCCAAAGCTTCTGGCTTGGCCATCGGATTCTAAATTTTCTCCTTGCATGTATGGTGCTTGCATTTGTTATATCTTGGCTCTTCCACTTTAACGTGTCATTGTAA | 690 | 46.52 | MAPLEVSQSDIDLELGNHRGSVSGSELSADCSVYFSDAEEGSCYSRFYSTNGGSYDEFRFAFVSQSAGLDSPRRVSSASDRSVEAEDEHGVDEIKVHFAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIALNILGPNGVESTEQSSESNNASSTTTIAASIPSSESQSFWLGHRILNFLLACMVLAFVISWLFHFNVSL | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 45443921 | 45446602 | - | Sed0002540.1 | Sed02g0773 | 704441 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0773 | 229 | SMART | ringv_2 | 104 | 157 | IPR011016 | GO:0008270(InterPro) | |
Sed02g0773 | 229 | CDD | RING_CH-C4HC3_MARCH | 105 | 157 | - | - | |
Sed02g0773 | 229 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 163 | IPR013083 | - | |
Sed02g0773 | 229 | PANTHER | ZINC FINGER, RING-CH-TYPE | 37 | 227 | - | - | |
Sed02g0773 | 229 | Pfam | RING-variant domain | 105 | 156 | IPR011016 | GO:0008270(InterPro) | |
Sed02g0773 | 229 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 97 | 163 | IPR011016 | GO:0008270(InterPro) | |
Sed02g0773 | 229 | SUPERFAMILY | RING/U-box | 102 | 159 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0773 | Sed-Chr2:45443921 | Sed11g2183 | Sed-Chr11:35549506 | 3.90E-52 | dispersed | |
Sed02g0773 | Sed-Chr2:45443921 | Sed04g1211 | Sed-Chr4:25097352 | 2.30E-105 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0773 | - | - | - | 0.0 |