Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0787 ATGGTTCCCTGTGGGATCACTCTTTCTCTTAAACCCCCTTCCCTTTGTACTCGCTCAAGCTTTAATGGCGGACCCACCTTCCGTTTCGGCCTCAAGCCTCCAATCCCTGAAACCCCATTTCAAATGAAGGGCAATCATGGCCATCGATTGGAGTTTAAGGATCTGGGTCGGCGTCAAATGCAATGTGGGTCGCTGAAATTTACGAGGATCTCAGCATCCTCTGGCGATGGTTCTGGCTCCGGCGGCGGCGGTGGAGGTGGCGGTGGTGGATATGGAGGTTATGGTCATGGAAGTTCTGGAGGCGGTGATGGGGATAGTGGCAAAGGCGGGGAGAATCGGTCTTTCTTATCTTGGTATTTGGCTCTTCTGGCAAAATACCCTGTTTTGGTGAAATCTGTAACATCTGGGATACTAAATGCTCTGGGTGATATAATTTGTCAGCTTGTTTTTGAAGAGGCGCAATCAGCAGATTTGAAAAGAACGTTAAGATTTTCTCTGTTGGGGCTTGCGTTAGTTGGTCCTGCACTACATTTCTGGTATTTGTACCTTAGTCAATTGGTGACCTTGCCTGGAGCTTCAGGGGCAGTCTTGCGCCTTCTTCTTGATCAGTTTGTTTTTACTCCGGTGTTCCTCGCAGCGTTTCTATCTGGATTACTAACATTGGAAGGGCGACCGTCAAATATTATTCCTAAGCTTCAACAGGAGTGGTTTTCTTCTGTTGTGGCTAATTGGAAACTCTGGATACCTTTCCAGTTTCTGAACTTCAGATTTGTTCCGCAGCAATTCCAGGTCCTTGCAGCTAATGTGCTCGCCTTGGCATGGAATGCCATCCTCTCCTTTAAAGCTCACAGAGAGATCGTTACACGATAG 870 47.7 MVPCGITLSLKPPSLCTRSSFNGGPTFRFGLKPPIPETPFQMKGNHGHRLEFKDLGRRQMQCGSLKFTRISASSGDGSGSGGGGGGGGGGYGGYGHGSSGGGDGDSGKGGENRSFLSWYLALLAKYPVLVKSVTSGILNALGDIICQLVFEEAQSADLKRTLRFSLLGLALVGPALHFWYLYLSQLVTLPGASGAVLRLLLDQFVFTPVFLAAFLSGLLTLEGRPSNIIPKLQQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNAILSFKAHREIVTR 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45524742 45530668 + Sed0018982.2 Sed02g0787 704455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0787 289 Pfam Mpv17 / PMP22 family 220 279 IPR007248 GO:0016020(InterPro)
Sed02g0787 289 PANTHER PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 113 283 IPR007248 GO:0005737(PANTHER)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0787 K13347 - - csv:101215097 416.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0787 Sed-Chr2:45524742 Sed12g1180 Sed-Chr12:7955791 3.40E-106 dispersed
Sed02g0786 Sed-Chr2:45524742 Sed02g0787 Sed-Chr2:45524742 2.40E-144 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g684 Blo02g00937 . Bda06g01208 . Bpe07g00269 . Bma05g00660 Bma12g00278 . . . . . . . . . . . . . . . . Cla10g01005 Cam10g1028 Cec10g1059 Cco10g1023 Clacu10g1045 Cmu10g1829 Cre10g1202 . . Cone3ag1021 Cone10ag1037 . . . . . . . . . Bpe05g00480 . . Sed02g0787 Cmo04g00489 . . . . . . Cpe01g00410 Bhi11g01149 Tan01g0648 Cmetu04g2145 . Hepe07g0425 Mch10g0455 . . . . . . . . Lsi03g01034 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006127 0 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 2 1 1 3 2 1 37