Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0794 ATGAAAGAAGATGACTCCAATTGGTTCTCAAAATGGGAGCATCAACTCCCTTCTCTCCATGAATTAATGCCCCTTTCCCAAACCCTAATCACCCCTGATCTTGCTTTGGCATTTGACATCAACAACAACAACAACAACCACCCAGCACCACCGCCGCACCCGCCGGTGCCACCCGCCGCCGATTTCGGGGACTCCGGCGAGTTCGGGTCCGGCGCCGGCGACGAACCCGCCAGGACCCTGAAACGCCCGAGGCTGGTCTGGACTCCACAGCTCCACAAGCGATTTGTAGACGCCGTTGCGCATTTGGGCATAAAAAACGCGGTCCCTAAGACCATAATGCAATTGATGAGCGTTGACGGGTTGACCCGTGAAAACGTGGCCAGCCATTTGCAGAAATACCGCCTCTATTTGAAGCGCATGCAGGGGATTTCCGGCGGCGGAGCTAGCGGTGGCGGCGGCGGCGCTGGATTGGGTTCTGCCGTTTCAGATCCCGCCACCGACCATTTGTTCGCTAGCTCCCCTGTTCCGCCGCATTTTCTTCACTCTGCTCGGACTAATTCCGGCCATTTCCTGCCCGTTTTCCCTGTCGGAGCTCTGCAGAACAACCACCACCAGATTGCTTCCTCCGCCGCTCAGTACCACCACCGGCAAGTGGCCCATTTTGGGTCGCCGCCGAATGGGCAGTTTGAGCATCCGTTTTTGGCTCGTCCTGTTCTTCGAATTGGGGCTCCGGCGAATACTCCGGCGACGAATTTCGGCGAGGATTTAGGTTCCAGTAATGGAACAGAAGAGAGGAAGATTCTCACTCTTTTTCCCACGGGAAAAGATTGA 831 56.08 MKEDDSNWFSKWEHQLPSLHELMPLSQTLITPDLALAFDINNNNNNHPAPPPHPPVPPAADFGDSGEFGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGGASGGGGGAGLGSAVSDPATDHLFASSPVPPHFLHSARTNSGHFLPVFPVGALQNNHHQIASSAAQYHHRQVAHFGSPPNGQFEHPFLARPVLRIGAPANTPATNFGEDLGSSNGTEERKILTLFPTGKD 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45622012 45623257 - Sed0002884.1 Sed02g0794 704462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0794 276 Gene3D - 79 141 - -
Sed02g0794 276 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 222 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0794 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 138 IPR017930 -
Sed02g0794 276 NCBIfam myb-like DNA-binding domain, SHAQKYF class 83 135 IPR006447 GO:0003677(InterPro)
Sed02g0794 276 MobiDBLite consensus disorder prediction 252 266 - -
Sed02g0794 276 SUPERFAMILY Homeodomain-like 79 139 IPR009057 -
Sed02g0794 276 MobiDBLite consensus disorder prediction 252 276 - -
Sed02g0794 276 FunFam Two-component response regulator 78 141 - -
Sed02g0794 276 Pfam Myb-like DNA-binding domain 85 134 IPR001005 -
Sed02g0794 276 MobiDBLite consensus disorder prediction 42 77 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0794 Sed-Chr2:45622012 Sed14g0045 Sed-Chr14:564554 7.60E-95 dispersed
Sed12g1174 Sed-Chr12:7835665 Sed02g0794 Sed-Chr2:45622012 1.30E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37567 PF00249 Myb_DNA-binding 1.90E-08 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0794 - - - 0.0