Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0803 ATGGGTAGTAGAACCGTGAAGATTGGTGCAGATGATATAAACATAACGGTGAACGGGATGCCTAGCTTTGTTTCTTCCATGCCCACAGCCAATAATTCCATGGACGCGGAGGGAAACTCTATTCCTTCATCTCGGATCTCAGACATAAGAACACTTGAGCAAACTCTTGGATTTCGCATTGAAGATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATGAAGTTAAATAGTTCGGCTCAGAACAACATCCAGTTTGGTTCTTTAATTAAGCCACCTGGATCCACTGATGTAAATCTGCCAACAGCTATCATGGGGTCTCAAAGATTGTCATTACAGAAAGAATCAAATCCAAATTTGGTTTCTACATCTAGTGGCCCTCGTGAAAACTGGGGCGAATCTAACATGGCCGATACAAGCACAAGAACTGATACCTCCACGGATGACACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCGAAAGATAAATCATCAGATCAGAAGACCTTGCGAAGGCTTGCCCAAAATCGTGAGGCTGCTAGAAAAAGTCGTTTAAGAAAAAAGGCATATGTCCAGCAGCTAGAAAGTAGCAGGCTGAAGCTGACTCAGCTCGAGCAAGAACTCCAGCGGGCCCGTCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCGATGAGTGGAAATGGAGCCCTAGCATTTGATGTTGAATATTCACGGTGGTTAGAGGAGCATAACAGGCTGATAAATGAGCTTAGAGCTGCAGTGAATTCACACGCGGGTGACACTGAACTTCGAACTATTGTTGATAATGTGACTGCACAGTTCGACGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTTCGCTCATCCGAGATCCTAAAGCTTCTTGGAAGCCAATTAGAGCCATTGACTGAGCAACAAGTTGTGGGAATCTGCAACCTGCAACAATTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTAGCTGAAACGTTGGCCAGCGGCGCACCTGTGTCGTCGGGGTCGTCTGGGAACGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGCCAGGCTGATAATCTTCGTCAACAAACACTCCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCACTTCTTGCAATAAACGACTATTTCTCCCGCCTTCGAGCCCTGAGCTCTCTGTGGCTTGCACGGCCACGAGAGTGA 1380 45.94 MGSRTVKIGADDINITVNGMPSFVSSMPTANNSMDAEGNSIPSSRISDIRTLEQTLGFRIEDVDLTRNPLYNQMKLNSSAQNNIQFGSLIKPPGSTDVNLPTAIMGSQRLSLQKESNPNLVSTSSGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAKDKSSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDVEYSRWLEEHNRLINELRAAVNSHAGDTELRTIVDNVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLGSQLEPLTEQQVVGICNLQQLSQQAEDALSQGMDALQQSLAETLASGAPVSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45695200 45703243 - Sed0009151.1 Sed02g0803 704471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0803 459 MobiDBLite consensus disorder prediction 109 143 - -
Sed02g0803 459 SUPERFAMILY Leucine zipper domain 174 217 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0803 459 Coils Coil 193 220 - -
Sed02g0803 459 CDD bZIP_HBP1b-like 174 225 - -
Sed02g0803 459 ProSiteProfiles DOG1 domain profile. 239 456 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed02g0803 459 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 172 216 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0803 459 Gene3D - 173 225 - -
Sed02g0803 459 MobiDBLite consensus disorder prediction 144 186 - -
Sed02g0803 459 MobiDBLite consensus disorder prediction 109 191 - -
Sed02g0803 459 PANTHER TRANSCRIPTION FACTOR TGA9 137 459 - -
Sed02g0803 459 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 177 192 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0803 459 Pfam Basic region leucine zipper 171 216 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0803 459 SMART brlzneu 170 233 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0803 459 Pfam Seed dormancy control 257 330 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed02g0803 459 FunFam BZIP family transcription factor 173 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0803 Sed-Chr2:45695200 Sed12g1160 Sed-Chr12:7691854 2.30E-152 dispersed
Sed12g1159 Sed-Chr12:7691854 Sed02g0803 Sed-Chr2:45695200 2.10E-190 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37568 PF14144 DOG1 1.10E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0803 K14431 - csv:101219149 788.104