Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0803 | ATGGGTAGTAGAACCGTGAAGATTGGTGCAGATGATATAAACATAACGGTGAACGGGATGCCTAGCTTTGTTTCTTCCATGCCCACAGCCAATAATTCCATGGACGCGGAGGGAAACTCTATTCCTTCATCTCGGATCTCAGACATAAGAACACTTGAGCAAACTCTTGGATTTCGCATTGAAGATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATGAAGTTAAATAGTTCGGCTCAGAACAACATCCAGTTTGGTTCTTTAATTAAGCCACCTGGATCCACTGATGTAAATCTGCCAACAGCTATCATGGGGTCTCAAAGATTGTCATTACAGAAAGAATCAAATCCAAATTTGGTTTCTACATCTAGTGGCCCTCGTGAAAACTGGGGCGAATCTAACATGGCCGATACAAGCACAAGAACTGATACCTCCACGGATGACACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCGAAAGATAAATCATCAGATCAGAAGACCTTGCGAAGGCTTGCCCAAAATCGTGAGGCTGCTAGAAAAAGTCGTTTAAGAAAAAAGGCATATGTCCAGCAGCTAGAAAGTAGCAGGCTGAAGCTGACTCAGCTCGAGCAAGAACTCCAGCGGGCCCGTCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCGATGAGTGGAAATGGAGCCCTAGCATTTGATGTTGAATATTCACGGTGGTTAGAGGAGCATAACAGGCTGATAAATGAGCTTAGAGCTGCAGTGAATTCACACGCGGGTGACACTGAACTTCGAACTATTGTTGATAATGTGACTGCACAGTTCGACGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTTCGCTCATCCGAGATCCTAAAGCTTCTTGGAAGCCAATTAGAGCCATTGACTGAGCAACAAGTTGTGGGAATCTGCAACCTGCAACAATTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTAGCTGAAACGTTGGCCAGCGGCGCACCTGTGTCGTCGGGGTCGTCTGGGAACGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGCCAGGCTGATAATCTTCGTCAACAAACACTCCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCACTTCTTGCAATAAACGACTATTTCTCCCGCCTTCGAGCCCTGAGCTCTCTGTGGCTTGCACGGCCACGAGAGTGA | 1380 | 45.94 | MGSRTVKIGADDINITVNGMPSFVSSMPTANNSMDAEGNSIPSSRISDIRTLEQTLGFRIEDVDLTRNPLYNQMKLNSSAQNNIQFGSLIKPPGSTDVNLPTAIMGSQRLSLQKESNPNLVSTSSGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAKDKSSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDVEYSRWLEEHNRLINELRAAVNSHAGDTELRTIVDNVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLGSQLEPLTEQQVVGICNLQQLSQQAEDALSQGMDALQQSLAETLASGAPVSSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE | 459 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 45695200 | 45703243 | - | Sed0009151.1 | Sed02g0803 | 704471 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0803 | 459 | MobiDBLite | consensus disorder prediction | 109 | 143 | - | - | |
Sed02g0803 | 459 | SUPERFAMILY | Leucine zipper domain | 174 | 217 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0803 | 459 | Coils | Coil | 193 | 220 | - | - | |
Sed02g0803 | 459 | CDD | bZIP_HBP1b-like | 174 | 225 | - | - | |
Sed02g0803 | 459 | ProSiteProfiles | DOG1 domain profile. | 239 | 456 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed02g0803 | 459 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 172 | 216 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0803 | 459 | Gene3D | - | 173 | 225 | - | - | |
Sed02g0803 | 459 | MobiDBLite | consensus disorder prediction | 144 | 186 | - | - | |
Sed02g0803 | 459 | MobiDBLite | consensus disorder prediction | 109 | 191 | - | - | |
Sed02g0803 | 459 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 137 | 459 | - | - | |
Sed02g0803 | 459 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 177 | 192 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0803 | 459 | Pfam | Basic region leucine zipper | 171 | 216 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0803 | 459 | SMART | brlzneu | 170 | 233 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0803 | 459 | Pfam | Seed dormancy control | 257 | 330 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed02g0803 | 459 | FunFam | BZIP family transcription factor | 173 | 222 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0803 | Sed-Chr2:45695200 | Sed12g1160 | Sed-Chr12:7691854 | 2.30E-152 | dispersed | |
Sed12g1159 | Sed-Chr12:7691854 | Sed02g0803 | Sed-Chr2:45695200 | 2.10E-190 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37568 | PF14144 | DOG1 | 1.10E-29 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0803 | K14431 | - | csv:101219149 | 788.104 |