Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed02g0819 | ATGGTTATGGCTGCCGATTCCCAATTCCATGTTCTTGCCGTCGATGACAGCATCATCGATAGAAAGCTCATCGAAAGGCTTCTCAAAACCTCTTCCTATCAAGTTACTGCTGTTGATTCTGGTAGTAAGGCTTTGGAATTTCTGGGTTTGATTCAAGAACATGAACATCCAAACTTCAAACCCCCTTCTTCTTCTTCTTCTCCTATTTCCTCCCACAATCATCATCATCACCAGGAAGTGGATGTGAATCTTATCATTACCGATTACTGCATGCCTGGAATGACTGGCTTCGATTTGCTCAAGAAAGTTAAGGAATCAACGTCTCTTAGAAACATACCTGTCGTGATAATGTCGTCCGAAAACGTACCTTCCAGAATCAGCAGATGTTTGGAAGAAGGAGCGGAAGAGTTCTTCCTGAAACCAGTGCGATTGTGCGATGTGAATAAACTGAAACCGCACATGATGAAGGCGAAACTGAAGGATCAGAATCAAGAAGAAGAAGAAGAAGACGAAACGGTGGAAAAGGAAATCGAATCGGTTGAAAAACAAGAACAGCAGTTGCAGATGAACGGTAACAAGAGAAATGCGGCGGCGATGGAGGACGGCGAAGCGGCGGAGAGAAGAAGAAGAAGGTACAACAACAATGGCGTCGCCACTGTGATTTGA | 666 | 44.29 | MVMAADSQFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGSKALEFLGLIQEHEHPNFKPPSSSSSPISSHNHHHHQEVDVNLIITDYCMPGMTGFDLLKKVKESTSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLCDVNKLKPHMMKAKLKDQNQEEEEEDETVEKEIESVEKQEQQLQMNGNKRNAAAMEDGEAAERRRRRYNNNGVATVI | 221 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 45861278 | 45863117 | + | Sed0006477.1 | Sed02g0819 | 704487 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed02g0819 | 221 | Gene3D | - | 10 | 220 | - | - | |
| Sed02g0819 | 221 | Coils | Coil | 195 | 215 | - | - | |
| Sed02g0819 | 221 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 7 | 195 | IPR045279 | GO:0009736(InterPro) | |
| Sed02g0819 | 221 | Coils | Coil | 156 | 190 | - | - | |
| Sed02g0819 | 221 | ProSiteProfiles | Response regulatory domain profile. | 10 | 155 | IPR001789 | GO:0000160(InterPro) | |
| Sed02g0819 | 221 | CDD | REC_typeA_ARR | 11 | 150 | - | - | |
| Sed02g0819 | 221 | SMART | REC_2 | 9 | 150 | IPR001789 | GO:0000160(InterPro) | |
| Sed02g0819 | 221 | MobiDBLite | consensus disorder prediction | 158 | 221 | - | - | |
| Sed02g0819 | 221 | SUPERFAMILY | CheY-like | 8 | 147 | IPR011006 | - | |
| Sed02g0819 | 221 | MobiDBLite | consensus disorder prediction | 199 | 213 | - | - | |
| Sed02g0819 | 221 | Pfam | Response regulator receiver domain | 76 | 144 | IPR001789 | GO:0000160(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g0819 | Sed-Chr2:45861278 | Sed14g0016 | Sed-Chr14:229095 | 4.30E-56 | dispersed | |
| Sed02g0819 | Sed-Chr2:45861278 | Sed03g2174 | Sed-Chr3:15982439 | 2.50E-56 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 37569 | PF00072 | Response_reg | 1.80E-13 | CL0304 | Sed | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed02g0819 | K14492 | - | csv:101220810 | 296.589 |