Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0840 ATGCTACGCCTCTACCACTCCCCTACTCTCTCCAGAGTCTTCCTCCTCCGGCGGTTTTCCTCCGCCGCCACCGCCGCCGCCCAGGTTCTCGATTCCGATCCCGAACCTTCGTTTTCGTACTTGGAGGGTTTTCCGAAGCCAGATCCCAAGTACGCCGAGACAATCCTCGCCATTCCGCGCTCCATCTCCGGCAAAAACATTTCCGCCAAAGAGCGCAAGGCTGGCCGCACTCCGAGCATCGTTTTCGAGCAAGAGGACGGCCAACATGGCGGAAATAAGCGTCTCATCTCTGTGCGGACGAATCAGATTCGGAAGCTTGTAAATCATCTCGGCCGTTCCTTCTTCCTTTCTAGGGTTTTCGATCTTGAAGTTCTGTCCGAGTTTGAGTCTGGGGATGTTGTTGAGAAGGTTCGGGTTTTACCGCGGCAGATTCATCTTCATGCGGGAACAGATGCACCACTTAATGTTACTTTCATAAGGGCACCTTCACATGCTTTATTAAAAGTTAATGTACCTCTTGTATTCCGAGGTGAAGATGTTTGTCCTGGATTGAGGAAAGGATCTTATTTGAATACAATTAAGAGGACTATTAAATACCTTTGCCCTGCCGATATCGTTCCTCCGTATATCGACGTCGATCTGAGCGAGTTAGATGTTGGCCAAAAGCTGGTTATGGGCGACCTCAAGGTTCATCCTGCATTAAAGCTCCTTCAGTCAAAGGACGAGCCTATTTGTAAGATTGCAGGAGCCAGAGCTGAGCAGCCTAAGAAATCAAAATAA 780 49.36 MLRLYHSPTLSRVFLLRRFSSAATAAAQVLDSDPEPSFSYLEGFPKPDPKYAETILAIPRSISGKNISAKERKAGRTPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRVFDLEVLSEFESGDVVEKVRVLPRQIHLHAGTDAPLNVTFIRAPSHALLKVNVPLVFRGEDVCPGLRKGSYLNTIKRTIKYLCPADIVPPYIDVDLSELDVGQKLVMGDLKVHPALKLLQSKDEPICKIAGARAEQPKKSK 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46016247 46020658 - Sed0004945.1 Sed02g0840 704508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0840 259 PANTHER RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN 21 255 IPR050070 GO:0006412(PANTHER)|GO:0008097(PANTHER)|GO:0022625(PANTHER)
Sed02g0840 259 Pfam Ribosomal protein TL5, C-terminal domain 168 250 IPR020057 -
Sed02g0840 259 SUPERFAMILY Ribosomal protein L25-like 54 254 IPR011035 GO:0006412(InterPro)
Sed02g0840 259 FunFam Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein 164 250 - -
Sed02g0840 259 Pfam Ribosomal L25p family 57 158 IPR029751 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Sed02g0840 259 Gene3D Ribosomal Protein L25; Chain P 54 161 IPR020056 -
Sed02g0840 259 Gene3D Ribosomal protein L25, beta domain 165 255 IPR037121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0840 K02897 - - csv:101205251 443.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0840 Sed-Chr2:46016247 Sed05g3365 Sed-Chr5:42863759 2.30E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g886 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0761 . . . . . . . . . . . . . . Sed02g0840 . . . . . . . . Bhi10g02238 Tan07g1016 Cmetu11g1488 . Hepe10g0820 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010163 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 2 31