Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0841 ATGGCGGATCAAGAAGATCAAATCCCTCTCCGGAAACCCATCGGAAAGCGCGCCGCCGCCGCAGCCAACCGGCCGGAATCCGACTCCGGCTTTTCTCCTCCGACACCCTGCGGCGCGTGCAAGTTTCTGAGAAGGAAATGCATCAACGGCTGCATCTTCGCGCCGCACTTCGCCTCCGATCAAGGCGCTGCTCGCTTCGCCGCCGTGCATAAGGTTTTCGGAGCGAGTAATGTCTCTAAGCTTCTGCTGCATATTCCGGTCAGCCGCCGTAACGACGCCGTCGTCACCATTACCTATGAGGCTCAGGCGAGACTCTCCGATCCTGTCTATGGCTGCGTCTCAACTGTACTTGCCCTACAACAACAGGTGGCATCTCTGCAGGCGGAGTTTGCGGCGGTTCAAACTCAACTGATAAGCAGCAGGTTGGCATTTGCAACTGCAATTCAAAACTCGCAGCCACCCCAAGTTGGAGTGCTGCAGCCAGCTTACTCCAACAACTCATCTATCTCTGTCTCTGCCTCGACCTCCGCTCATAACGCTATCAATTTGAGTAGTTTTGCTTCCAATTACGACCTTCCGACCGAGGCTGCCCCATCTCCCCATCACTTGGAGCCTCTCCACCTCCCCCACCAATCCATCGAAGAGGAGGACGACGAGGAAAATAGTCGGTTGCCTTCCATCTTTGTTGACGAGCTACTCCGTCGGAGATGA 711 55.7 MADQEDQIPLRKPIGKRAAAAANRPESDSGFSPPTPCGACKFLRRKCINGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTITYEAQARLSDPVYGCVSTVLALQQQVASLQAEFAAVQTQLISSRLAFATAIQNSQPPQVGVLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTEAAPSPHHLEPLHLPHQSIEEEDDEENSRLPSIFVDELLRRR 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46022558 46041579 + Sed0010390.1 Sed02g0841 704509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0841 236 ProSiteProfiles LOB domain profile. 35 137 IPR004883 -
Sed02g0841 236 PANTHER LOB DOMAIN CONTAINING PROTEIN 35 202 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Sed02g0841 236 MobiDBLite consensus disorder prediction 1 33 - -
Sed02g0841 236 Coils Coil 116 136 - -
Sed02g0841 236 Pfam Lateral organ boundaries (LOB) domain 36 134 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0841 Sed-Chr2:46022558 Sed09g0109 Sed-Chr9:822546 5.10E-39 dispersed
Sed02g0841 Sed-Chr2:46022558 Sed04g2174 Sed-Chr4:35791561 1.00E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37572 PF03195 LOB 6.50E-37 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0841 - - - 0.0