Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0843 ATGGCTTCTTTGTCCTCTGATTCTGGCTTCAAACACGAAGCCGGTGCCTGTAGCGCCGCCGCTGGTGGAGGAGGAGGAGCGGCGGAGTCGTCGGAGGTTGTAATGGCAAACGATCAGGTTTTACTGTACAGAGGATTGAAGAAGGCGAAGAAAGAGAGAGGTTGCACCGCCAAAGAGCGCATCAGTAAAATGCCTCCCTGTGCTGCTGGAAAACGGAGCTCTATATATCGTGGAGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAACAAGTGTATCTTGGAGCTTATGATGAAGAAGAGGCAGCTGCTAGGGCATACGATTTGGCAGCCTTAAAATACTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGGGACCTTGAAGAAATGCAGAATGTTTCACGAGAGGAATATCTTGCATCTCTAAGGAGAAAGAGCAGTGGATTTTCCAGGGGATTATCTAAATATCGTGGACTCTCAAGTCGATGGGACCCTTCATTTGGTCGTTTGCCAGGCCCTGATTACGTCAACAGCATAAATTATGGTGCTGGGGACGATCAAGCAATGGGAAGCGAATTCGTCCACAACTTCTGTATTGATAGGAAGATAGATTTAACAAGTCACATTAAGTGGTGGGGGCCCAACAAAACTCGAACGGCAAGTGCTGGCTCAAAGTCATCAGAGGAAGACAAACATAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTTGGACAGACTATCCGTCCCACAGAGCCGTATGAGATGCCCTGTTTGGGTACATTACATGGGATAAAGAAGGTTGCTTCCAAGGTCTCTGCTTTAAGCATTTTGTCACGGTCGGCAGCCTACAAGAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAATTAAGAATGAGATTGATGAGAACGAAAATAAAAACACTGTTAACAAGATAGATCATGGGAGAGTGGTTGAGACACATACAAATCATGGTGGTGATCTTGGTGAGAGTTTTGGGGTTGCTTTCGGAACAAATGGTGGTTTGCCACTGCAGAGAAATATGTTCCCCTTGACTTCATTCTTAACTGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGATCCCATTCATTGGACATCTCTTGTTTCTGTTCTTCCTACCGAACTTTCTCGTACTGCCGAGGTTACAAAGACTGAAACCTCTTCAACTTACACTTTGTTTCAGCCTGAAGAATAA 1299 45.19 MASLSSDSGFKHEAGACSAAAGGGGGAAESSEVVMANDQVLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWDPSFGRLPGPDYVNSINYGAGDDQAMGSEFVHNFCIDRKIDLTSHIKWWGPNKTRTASAGSKSSEEDKHSCAGEVGSELKALGQTIRPTEPYEMPCLGTLHGIKKVASKVSALSILSRSAAYKSLQEKALKLQEIKNEIDENENKNTVNKIDHGRVVETHTNHGGDLGESFGVAFGTNGGLPLQRNMFPLTSFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTELSRTAEVTKTETSSTYTLFQPEE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46049876 46055185 + Sed0006957.1 Sed02g0843 704511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0843 432 Gene3D AP2/ERF domain 75 143 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0843 432 ProSiteProfiles AP2/ERF domain profile. 75 141 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0843 432 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 50 250 - -
Sed02g0843 432 SUPERFAMILY DNA-binding domain 74 142 IPR016177 GO:0003677(InterPro)
Sed02g0843 432 Coils Coil 307 330 - -
Sed02g0843 432 SMART rav1_2 75 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0843 432 FunFam AP2-like ethylene-responsive transcription factor 74 143 - -
Sed02g0843 432 PRINTS Ethylene responsive element binding protein signature 123 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0843 432 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0843 432 Pfam AP2 domain 76 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0843 Sed-Chr2:46049876 Sed08g0558 Sed-Chr8:3755793 5.40E-55 dispersed
Sed12g1105 Sed-Chr12:7215771 Sed02g0843 Sed-Chr2:46049876 5.00E-210 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37574 PF00847 AP2 3.50E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0843 K09285 - csv:101206434 755.362