Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed02g0850 | ATGTCAATAGAGCGGTATTTAGACAAGGACTTCGAAATCAAGCCAAAACATTCTTCGGAAGAAGAACTGAGGAACTGGAGATCTGCCGTAACAATCGTTAAGAATCCAAGCCGGCGGTTCCGAATCGTTGCAGATCTCGAAAAACGATCCGAGGCCGAGAAGAAGAAGCTCAAAATCCAGGAAAAAATTCGAGTTGCTCTTTATGTTCAGAAGGCAGCATTGCAGTTTATCGATGCTATAAGACAGGACGAGTACCATTTGTCAGAGGAGGCTGTCAATGCTGGTTATTGTATTCATCCAGATGAGCTGGCAGCCATAGTCCGAAGCCATGATCAAAAGTCATTGAGATTCCATGGTGGCGTCGAAGGACTTTCAAGAAAGGTTTCTGTCGCGCTAGATGCAGGTGTTAGTGAAAAGGACACATCCAAGAGACAAGAGATTTATGGTTATAATCGTTATACAGAGAAACCTTCCAGATCATTTTTGGTGTTTGTATGGGAAGCATTACATGACCTAACATTAATAATCCTAATATTTTGTGCACTAATTTCTTTGGGAGTTGGAATTGCCACTGAAGGATGGCCGAAGGGCATCTATGATGGTTTAGGAATTTTACTAAGTATACTATTGGTCGTCTTGGTTACTTCTATTAGTGATTACAAGCAGTCTTTGCAATTCAGGGATCTTGACCGGGAAAAGAAAAAAATTTATGTTGATGTCACTAGAGATAGGCTGAGAAAAAAGGTTTCGATTTATGACTTGGTTGTAGGAGATATTGTTCATCTATCTATTGGAGATCAAGTTCCTGCTGATGGGGTTTTCATATCAGGATATAGTCTCTTAATTGATGAATCCAGCTTATCAGGTGAATGTGAGCCGGTGAACATAGATGAGGAGAAACCATTTCTTCTTTCAGGAACCAAAGTGCAAGATGGATCTGGAAAGATGATGGTAACAACAGTTGGTATGAAAACCGAATGGGGAAAATTGATGGAAACTCTAAGCGAGGGAGGAGAAGATGAGACACCACTGCAGGTGAAGCTGAATGGTGTAGCAACTCTTATTGGTAAAATTGGTTTGACTTTTGCTGTATTGACATTCCTGGTGATGACAGGAAGGTTTCTCTTGCAAAAAGCTATTGACCATCAATTTACAAAGTGGTCTTCAAGTGATGCACTAAAACTCTTAGATTTCTTTGCCATCGCAGTTACGATAATAGTCGTTGCAGTTCCTGAAGGCTTGCCATTGGCAGTGACATTGAGCCTTGCCTTTGCTATGAAGAAATTGATGGAAGAAAGAGCACTGGTCAGGCATCTGTCTGCATGTGAAACGATGGGTTCAGCCACATGCATTTGCACCGACAAGACTGGGACATTAACCACAAACCATATGATAGTTAGTCGTGCATGGATCTCTGAAAATTTTATGGAGAATAAAGACCATGAGAGTGTAAATAAATTGAAATTGGAGATCTCCGAAAACGTTCTAGGCATATTATTGCAGTGCATATTTCAAAATACTAGCTGCGAAGTGACGAAAGATAAAGACGGGCAGAACTCAATCGTCGGCGGAACACCAACGGAATCATCACTATTAGAGTTCGGTATGCATTTGGGTGGGGATTATCATGCCCAACGTACAGAATATAAGATACTTAAGGTTGAGCCGTTCAATTCTGTTAGGAAGAAAATGTCTGTACTTGTAGCTCTTCCTAATGGTGGGGTCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATACTTAGTATGTGTGACAAGTTCATTGATCCCAATGGAGAGTCTATTGACTTAACAGAAGAGAAGGTAAAGAATGCTACAAATGTCATCAATAGTTTTGCCAATGAAGCTTTGAGGACACTTTGCTTGGCCTTCAGAGATATAAAGGACTCAAGTGACAATTCTATTCCAGATGATGGATATACATTAATTGCAGTTGTTGGAATCAAGGATCCTGTACGCCAAGGGGTCAAAGAAGCTGTTAAAACTTGTTTAAAAGCTGGAATAACTGTGCGCATGGTAACGGGTGACAATATTAATACAGCAAAGGCTATTGCTAGAGAATGTGGTATACTTACAGATCATGGTGTAGCTATAGAAGGACCTGACTTCCGTAATTTATCTCCAGTGCAGATGTGGGAAGTTATACCAAAAATTCAGGTGATGGCTCGGTCCTTGCCACTGGACAAATACACATTGGTTAACAATTTGCGAACTATGTTTGGCGAGGTCGTTGCAGTGACTGGAGATGGGACCAATGATGCTCCAGCTTTGCATGAGTCAGATATTGGACTAGCTATGGGCATTGCCGGGACCGAGGTGGCCAAAGAGAATGCCGATGTCATCATAATGGACGACAATTTTTCAACCATTGTAAATGTTGCAAAATGGGGACGTGCTGTGTATATTAACATACAAAAGTTTGTGCAGTTTCAGCTAACAGTTAACATTGTTGCTTTAGTGATTAATTTTGTTTCTGCCTGCCTCTCAGGTGTATTCATCAACCAAGTTGCTTCTTTTAAGTTAGGCCATTTGGAAATGACTAAAAATTGA | 2568 | 40.69 | MSIERYLDKDFEIKPKHSSEEELRNWRSAVTIVKNPSRRFRIVADLEKRSEAEKKKLKIQEKIRVALYVQKAALQFIDAIRQDEYHLSEEAVNAGYCIHPDELAAIVRSHDQKSLRFHGGVEGLSRKVSVALDAGVSEKDTSKRQEIYGYNRYTEKPSRSFLVFVWEALHDLTLIILIFCALISLGVGIATEGWPKGIYDGLGILLSILLVVLVTSISDYKQSLQFRDLDREKKKIYVDVTRDRLRKKVSIYDLVVGDIVHLSIGDQVPADGVFISGYSLLIDESSLSGECEPVNIDEEKPFLLSGTKVQDGSGKMMVTTVGMKTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLLQKAIDHQFTKWSSSDALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMEERALVRHLSACETMGSATCICTDKTGTLTTNHMIVSRAWISENFMENKDHESVNKLKLEISENVLGILLQCIFQNTSCEVTKDKDGQNSIVGGTPTESSLLEFGMHLGGDYHAQRTEYKILKVEPFNSVRKKMSVLVALPNGGVRAFVKGASEIILSMCDKFIDPNGESIDLTEEKVKNATNVINSFANEALRTLCLAFRDIKDSSDNSIPDDGYTLIAVVGIKDPVRQGVKEAVKTCLKAGITVRMVTGDNINTAKAIARECGILTDHGVAIEGPDFRNLSPVQMWEVIPKIQVMARSLPLDKYTLVNNLRTMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVAKWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGVFINQVASFKLGHLEMTKN | 855 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 46086135 | 46094788 | + | Sed0021756.2 | Sed02g0850 | 704518 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed02g0850 | 855 | Coils | Coil | 601 | 621 | - | - | |
| Sed02g0850 | 855 | PRINTS | H+-transporting ATPase (proton pump) signature | 611 | 629 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed02g0850 | 855 | PRINTS | H+-transporting ATPase (proton pump) signature | 753 | 769 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed02g0850 | 855 | PRINTS | H+-transporting ATPase (proton pump) signature | 785 | 810 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed02g0850 | 855 | SMART | Cation_ATPase_N_a_2 | 115 | 189 | IPR004014 | - | |
| Sed02g0850 | 855 | SUPERFAMILY | HAD-like | 451 | 829 | IPR036412 | - | |
| Sed02g0850 | 855 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 7 | 51 | IPR024750 | GO:0005516(InterPro) | |
| Sed02g0850 | 855 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 118 | 837 | IPR023298 | - | |
| Sed02g0850 | 855 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 458 | 662 | IPR023299 | GO:0000166(InterPro) | |
| Sed02g0850 | 855 | PRINTS | P-type cation-transporting ATPase superfamily signature | 452 | 466 | - | - | |
| Sed02g0850 | 855 | PRINTS | P-type cation-transporting ATPase superfamily signature | 283 | 297 | - | - | |
| Sed02g0850 | 855 | PRINTS | P-type cation-transporting ATPase superfamily signature | 777 | 789 | - | - | |
| Sed02g0850 | 855 | PRINTS | P-type cation-transporting ATPase superfamily signature | 672 | 682 | - | - | |
| Sed02g0850 | 855 | PRINTS | P-type cation-transporting ATPase superfamily signature | 650 | 661 | - | - | |
| Sed02g0850 | 855 | PRINTS | P-type cation-transporting ATPase superfamily signature | 753 | 772 | - | - | |
| Sed02g0850 | 855 | Pfam | Cation transporter/ATPase, N-terminus | 118 | 184 | IPR004014 | - | |
| Sed02g0850 | 855 | FunFam | Calcium-transporting ATPase | 648 | 798 | - | - | |
| Sed02g0850 | 855 | FunFam | Calcium-transporting ATPase | 214 | 335 | - | - | |
| Sed02g0850 | 855 | Gene3D | - | 167 | 835 | - | - | |
| Sed02g0850 | 855 | Gene3D | - | 135 | 335 | - | - | |
| Sed02g0850 | 855 | Gene3D | - | 18 | 79 | - | - | |
| Sed02g0850 | 855 | Gene3D | - | 449 | 798 | IPR023214 | - | |
| Sed02g0850 | 855 | Gene3D | - | 462 | 657 | IPR023299 | GO:0000166(InterPro) | |
| Sed02g0850 | 855 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 109 | 836 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Sed02g0850 | 855 | NCBIfam | HAD-IC family P-type ATPase | 204 | 481 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed02g0850 | 855 | NCBIfam | HAD-IC family P-type ATPase | 550 | 698 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed02g0850 | 855 | NCBIfam | HAD-IC family P-type ATPase | 721 | 839 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed02g0850 | 855 | SFLD | p-type atpase | 434 | 805 | IPR044492 | - | |
| Sed02g0850 | 855 | Coils | Coil | 43 | 63 | - | - | |
| Sed02g0850 | 855 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 454 | 460 | IPR018303 | - | |
| Sed02g0850 | 855 | PANTHER | CATION TRANSPORTING ATPASE | 78 | 837 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Sed02g0850 | 855 | FunFam | Calcium-transporting ATPase | 18 | 78 | - | - | |
| Sed02g0850 | 855 | Pfam | haloacid dehalogenase-like hydrolase | 644 | 765 | - | - | |
| Sed02g0850 | 855 | Pfam | E1-E2 ATPase | 235 | 431 | - | - | |
| Sed02g0850 | 855 | SFLD | Haloacid Dehalogenase | 434 | 805 | - | - | |
| Sed02g0850 | 855 | Pfam | Cation transport ATPase (P-type) | 508 | 592 | - | - | |
| Sed02g0850 | 855 | FunFam | Calcium-transporting ATPase | 462 | 657 | - | - | |
| Sed02g0850 | 855 | SUPERFAMILY | Calcium ATPase, transduction domain A | 237 | 333 | IPR008250 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g0850 | Sed-Chr2:46086135 | Sed12g1101 | Sed-Chr12:7160757 | 0.00E+00 | dispersed | |
| Sed02g0849 | Sed-Chr2:46086135 | Sed02g0850 | Sed-Chr2:46086135 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed02g0850 | K01537 | - | csv:101206199 | 1416.36 |