Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0871 ATGGCAAGGTTGGATGCTGAAGGGCAATTAGAGAAGCTGATGAAAGTTCACGAGGAAGAGGAGGAGGAAGTTATTCAGTATCCCTTTTGTACTCTCTTGGATGCCAGAATTGATATTGCAAAGTATTCTATCGTAACAGCAGCTTCACGTCTTGAACGTGCAAAGAGGAAAAGGGATGACCCGGATGAAGATGTGGAAGCAGAAATGGATTGGGCTTTGAGACAGGCTGAAAGTTTGGTCCTGGACTGCAGTGAGATAGGAGATGATCGACCACTTTCTGGCTGTTCTTTCTCAGCTGATGGAAAATCCCTTGCCACTAGTTCATTAAGTGGAGTGGCAAAACTGTGGAGCATGCCTCTAGTAAGAAAGGTTTCCAACTTTAAGGGGCATACAGAGCGTGTTACTGATGTAACATTTTCTCCAGTGAATGAGTGTTTAGCAACTGCCTCTCCTGACCCAACAGCAAGGTTGTGGTCTTTTAAAGGGGTGCGAGGTCCTCCGATACCTAATTTGGGAATGATTAGAGGTTGGAGATATACCCCTCTGCTCTATGTTGCCTTATGGACAATGCATTGCAACTGTGTCGCATGA 591 45.35 MARLDAEGQLEKLMKVHEEEEEEVIQYPFCTLLDARIDIAKYSIVTAASRLERAKRKRDDPDEDVEAEMDWALRQAESLVLDCSEIGDDRPLSGCSFSADGKSLATSSLSGVAKLWSMPLVRKVSNFKGHTERVTDVTFSPVNECLATASPDPTARLWSFKGVRGPPIPNLGMIRGWRYTPLLYVALWTMHCNCVA 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46252904 46256247 + Sed0000547.4 Sed02g0871 704539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0871 196 SMART WD40_4 76 117 IPR001680 GO:0005515(InterPro)
Sed02g0871 196 SMART WD40_4 120 159 IPR001680 GO:0005515(InterPro)
Sed02g0871 196 Gene3D - 69 176 IPR015943 GO:0005515(InterPro)
Sed02g0871 196 ProSiteProfiles Trp-Asp (WD) repeats profile. 127 161 IPR001680 GO:0005515(InterPro)
Sed02g0871 196 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 127 161 - -
Sed02g0871 196 SUPERFAMILY WD40 repeat-like 87 161 IPR036322 GO:0005515(InterPro)
Sed02g0871 196 Pfam WD domain, G-beta repeat 91 117 IPR001680 GO:0005515(InterPro)
Sed02g0871 196 Pfam WD domain, G-beta repeat 123 159 IPR001680 GO:0005515(InterPro)
Sed02g0871 196 Coils Coil 3 23 - -
Sed02g0871 196 PANTHER WD40 REPEAT PROTEIN 5 160 - GO:0000398(PANTHER)|GO:0017070(PANTHER)|GO:0030621(PANTHER)|GO:0046540(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0871 K12662 - - csv:101207521 260.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0869 Sed-Chr2:46252904 Sed02g0871 Sed-Chr2:46252904 1.90E-82 dispersed
Sed02g0871 Sed-Chr2:46252904 Sed12g1072 Sed-Chr12:7025818 1.10E-63 dispersed
Sed02g0870 Sed-Chr2:46252904 Sed02g0871 Sed-Chr2:46252904 1.90E-82 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g509 . . Bda01g00765 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed02g0871 . . . . . . . . Bhi09g03000 Tan01g3572 Cmetu07g0650 . Hepe01g1970 Mch11g0508 . . . . . . . . . . . Cme07g00115
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005918 1 2 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 0 1 1 1 1 1 5 2 1 38