Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0873 | ATGATGCAGCCGGATCAAAGCTCTGAGCTTTACAGATTCTTGGCCCAAAACGGAGCCTTTAACTTTCCGGCGGCTCAAAGCTTGTCCAGTTCATCCTCGGCTTACTACCCTTTGGACCCATCGCCGGCGGCCGCCGCCGCTGACACGGCGGCGCCGTCGCCTCACGACAGAGCCCTGGCCGCCTTGAAGAATCATAAGGAAGCTGAGAAGCGTAGGAGAGAGAGAATCAACTCTCATCTTGATCAGCTCAGGACTCTTCTTCCTTGTAATTCTAAGACGGACAAGGCGTCGCTGCTTGCAAAAGTGGTACAGCGAGTGAAAGAACTGAAGCATCAAACCGCCGACATCGCCGAGCTCGAAACATTCCCTTCGGAGATGGACGAGATCACGGTCCTCTCCGGGGAGCCGTCTGGGGATGGGCGGCTCCTGTTCAAGGCATCGCTGTGCTGCGAGGACCGCTCCGACCTGATCCCGGAGCTGAACGACATTCTGAATTCGCTGCAGCTCAAGACCCTGAGGGCCGACATCGTAACCGTTGGTGGAAGAATCCGCAATGTTCTTGTTATCGCCGCCGACGACCGCCACAGCGTCGAGTCCGTTCATTTTCTACAGAATGCATTGAAATCTCTCCTTGAACGATCCAATTCTAGTGATAGATCCAAGCGCAGGCGGCTTGTACTTGCCCACAAATCATGA | 696 | 55.03 | MMQPDQSSELYRFLAQNGAFNFPAAQSLSSSSSAYYPLDPSPAAAAADTAAPSPHDRALAALKNHKEAEKRRRERINSHLDQLRTLLPCNSKTDKASLLAKVVQRVKELKHQTADIAELETFPSEMDEITVLSGEPSGDGRLLFKASLCCEDRSDLIPELNDILNSLQLKTLRADIVTVGGRIRNVLVIAADDRHSVESVHFLQNALKSLLERSNSSDRSKRRRLVLAHKS | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 46277267 | 46280938 | - | Sed0002227.1 | Sed02g0873 | 704541 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0873 | 231 | FunFam | transcription factor bHLH30 | 55 | 118 | - | - | |
Sed02g0873 | 231 | Gene3D | - | 56 | 120 | IPR036638 | GO:0046983(InterPro) | |
Sed02g0873 | 231 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 60 | 109 | IPR011598 | GO:0046983(InterPro) | |
Sed02g0873 | 231 | MobiDBLite | consensus disorder prediction | 30 | 54 | - | - | |
Sed02g0873 | 231 | SMART | finulus | 66 | 115 | IPR011598 | GO:0046983(InterPro) | |
Sed02g0873 | 231 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 39 | 227 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g0873 | 231 | CDD | bHLH_AtAIG1_like | 56 | 131 | - | - | |
Sed02g0873 | 231 | Pfam | Helix-loop-helix DNA-binding domain | 64 | 110 | IPR011598 | GO:0046983(InterPro) | |
Sed02g0873 | 231 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 64 | 118 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0873 | Sed-Chr2:46277267 | Sed07g2054 | Sed-Chr7:35700128 | 1.50E-40 | dispersed | |
Sed02g0873 | Sed-Chr2:46277267 | Sed11g1583 | Sed-Chr11:31337122 | 2.10E-42 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37576 | PF00010 | HLH | 6.20E-12 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0873 | - | - | - | 0.0 |