Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0873 ATGATGCAGCCGGATCAAAGCTCTGAGCTTTACAGATTCTTGGCCCAAAACGGAGCCTTTAACTTTCCGGCGGCTCAAAGCTTGTCCAGTTCATCCTCGGCTTACTACCCTTTGGACCCATCGCCGGCGGCCGCCGCCGCTGACACGGCGGCGCCGTCGCCTCACGACAGAGCCCTGGCCGCCTTGAAGAATCATAAGGAAGCTGAGAAGCGTAGGAGAGAGAGAATCAACTCTCATCTTGATCAGCTCAGGACTCTTCTTCCTTGTAATTCTAAGACGGACAAGGCGTCGCTGCTTGCAAAAGTGGTACAGCGAGTGAAAGAACTGAAGCATCAAACCGCCGACATCGCCGAGCTCGAAACATTCCCTTCGGAGATGGACGAGATCACGGTCCTCTCCGGGGAGCCGTCTGGGGATGGGCGGCTCCTGTTCAAGGCATCGCTGTGCTGCGAGGACCGCTCCGACCTGATCCCGGAGCTGAACGACATTCTGAATTCGCTGCAGCTCAAGACCCTGAGGGCCGACATCGTAACCGTTGGTGGAAGAATCCGCAATGTTCTTGTTATCGCCGCCGACGACCGCCACAGCGTCGAGTCCGTTCATTTTCTACAGAATGCATTGAAATCTCTCCTTGAACGATCCAATTCTAGTGATAGATCCAAGCGCAGGCGGCTTGTACTTGCCCACAAATCATGA 696 55.03 MMQPDQSSELYRFLAQNGAFNFPAAQSLSSSSSAYYPLDPSPAAAAADTAAPSPHDRALAALKNHKEAEKRRRERINSHLDQLRTLLPCNSKTDKASLLAKVVQRVKELKHQTADIAELETFPSEMDEITVLSGEPSGDGRLLFKASLCCEDRSDLIPELNDILNSLQLKTLRADIVTVGGRIRNVLVIAADDRHSVESVHFLQNALKSLLERSNSSDRSKRRRLVLAHKS 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46277267 46280938 - Sed0002227.1 Sed02g0873 704541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0873 231 FunFam transcription factor bHLH30 55 118 - -
Sed02g0873 231 Gene3D - 56 120 IPR036638 GO:0046983(InterPro)
Sed02g0873 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983(InterPro)
Sed02g0873 231 MobiDBLite consensus disorder prediction 30 54 - -
Sed02g0873 231 SMART finulus 66 115 IPR011598 GO:0046983(InterPro)
Sed02g0873 231 PANTHER TRANSCRIPTION FACTOR BHLH30 39 227 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g0873 231 CDD bHLH_AtAIG1_like 56 131 - -
Sed02g0873 231 Pfam Helix-loop-helix DNA-binding domain 64 110 IPR011598 GO:0046983(InterPro)
Sed02g0873 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 118 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0873 Sed-Chr2:46277267 Sed07g2054 Sed-Chr7:35700128 1.50E-40 dispersed
Sed02g0873 Sed-Chr2:46277267 Sed11g1583 Sed-Chr11:31337122 2.10E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37576 PF00010 HLH 6.20E-12 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0873 - - - 0.0