Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0884 ATGAACGATCTTCTTTCGGATTCCTTCAATCGAGGTCAACCTTCTAGGGGAGGAGACATTGAACAAGGAATAAATGCTCCTACCAGTGCAGAGGATCTGGGCTTGGAGGATTTCTTTAAAAAGGTCCAAGAGATTGAAAAACAGAATGAGAAGCTCGATAGGCTACTAAGAAAGCTCCAGGATTCACACGAGGAGTCCAAAGCTGTGACCAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGGATGGAAAAGGATGTCGATGAAGTTGGAAAAGTTGCACGTTCTGTGAAGGCCAAAGTTGAAGAACTCGACCGTGAGAATCTGTCAAATAGGCAGAGGCTCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTTCCTTAAAAAAGAAGTTGAAAGACAAGATGTCTGAATTCCAGATTTTACGTGAAAAAATCAATCAAGAGTATCGAGAAGTTGTTGAGAGACGGGTTTTCACAGTCACGGGTGCTAGGGCTGACGAGGAGACCATCGAGAAATTAATTGAAACTGGGGATAGTGAACAAATCTTTCAGAAGGCAATTCAAGAACAAGGACGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGGACTAGAGAAGAAATTACTCGAGCTACAGCAGGTATTTCTGGACATGGCAGTATTGGTAGATGCACAAGGGGACATGCTCGACAATATTGAATCGCATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCTTTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGGTAGGGGTGCCTAA 921 43.21 MNDLLSDSFNRGQPSRGGDIEQGINAPTSAEDLGLEDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARSVKAKVEELDRENLSNRQRLGCGKGSGVDRSRTATTLSLKKKLKDKMSEFQILREKINQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRGLEKKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCFAIIILLIIVVVIVVGVLKPWNNGRGA 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46386456 46397519 + Sed0019057.1 Sed02g0884 704552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0884 306 SMART SynN_4 30 156 IPR006011 GO:0016020(InterPro)
Sed02g0884 306 ProSitePatterns Syntaxin / epimorphin family signature. 211 250 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed02g0884 306 Gene3D - 195 298 - -
Sed02g0884 306 MobiDBLite consensus disorder prediction 1 29 - -
Sed02g0884 306 FunFam Syntaxin 132 30 159 - -
Sed02g0884 306 SMART tSNARE_6 200 267 IPR000727 -
Sed02g0884 306 Pfam SNARE domain 241 293 IPR000727 -
Sed02g0884 306 Coils Coil 134 154 - -
Sed02g0884 306 FunFam Syntaxin 132 198 298 - -
Sed02g0884 306 CDD SNARE_syntaxin1-like 204 266 - -
Sed02g0884 306 SUPERFAMILY t-snare proteins 33 260 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed02g0884 306 MobiDBLite consensus disorder prediction 1 15 - -
Sed02g0884 306 CDD SynN 35 192 IPR006011 GO:0016020(InterPro)
Sed02g0884 306 Pfam Syntaxin 37 240 IPR006011 GO:0016020(InterPro)
Sed02g0884 306 PANTHER SYNTAXIN 37 287 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed02g0884 306 Gene3D - 35 163 - -
Sed02g0884 306 Coils Coil 35 69 - -
Sed02g0884 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 267 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0884 Sed-Chr2:46386456 Sed02g0886 Sed-Chr2:46386456 7.80E-117 dispersed
Sed02g0884 Sed-Chr2:46386456 Sed02g0885 Sed-Chr2:46386456 7.80E-117 tandem
Sed05g3073 Sed-Chr5:41018533 Sed02g0884 Sed-Chr2:46386456 2.90E-82 transposed
Sed12g1058 Sed-Chr12:6925863 Sed02g0884 Sed-Chr2:46386456 1.60E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0884 K08486 - csv:101203075 508.834