Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0885 ATGAACGATCTTCTTTCGGATTCCTTCAATCGAGGTCAACCTTCTAGGGGAGGAGACATTGAACAAGGAATAAATGCTCCTACCAGTGCAGAGGATCTGGGCTTGGAGGATTTCTTTAAAAAGGTCCAAGAGATTGAAAAACAGAATGAGAAGCTCGATAGGCTACTAAGAAAGCTCCAGGATTCACACGAGGAGTCCAAAGCTGTGACCAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGGATGGAAAAGGATGTCGATGAAGTTGGAAAAGTTGCACGTTCTGTGAAGGCCAAAGTTGAAGAACTCGACCGTGAGAATCTGTCAAATAGGCAGAGGCTCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTTCCTTAAAAAAGAAGTTGAAAGACAAGATGTCTGAATTCCAGATTTTACGTGAAAAAATCAATCAAGAGTATCGAGAAGTTGTTGAGAGACGGGTTTTCACAGTCACGGGTGCTAGGGCTGACGAGGAGACCATCGAGAAATTAATTGAAACTGGGGATAGTGAACAAATCTTTCAGAAGGCAATTCAAGAACAAGGACGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGGACTAGAGAAGAAATTACTCGAGCTACAGCAGGTATATTAG 690 43.33 MNDLLSDSFNRGQPSRGGDIEQGINAPTSAEDLGLEDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARSVKAKVEELDRENLSNRQRLGCGKGSGVDRSRTATTLSLKKKLKDKMSEFQILREKINQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRGLEKKLLELQQVY 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46386456 46397519 + Sed0019057.2 Sed02g0885 704553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0885 229 SMART SynN_4 30 156 IPR006011 GO:0016020(InterPro)
Sed02g0885 229 MobiDBLite consensus disorder prediction 1 15 - -
Sed02g0885 229 Pfam Syntaxin 37 229 IPR006011 GO:0016020(InterPro)
Sed02g0885 229 CDD SynN 35 192 IPR006011 GO:0016020(InterPro)
Sed02g0885 229 PANTHER SYNTAXIN 37 228 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed02g0885 229 MobiDBLite consensus disorder prediction 1 29 - -
Sed02g0885 229 Coils Coil 35 69 - -
Sed02g0885 229 Gene3D - 32 229 - -
Sed02g0885 229 FunFam Syntaxin 132 30 159 - -
Sed02g0885 229 Coils Coil 134 154 - -
Sed02g0885 229 SUPERFAMILY t-snare proteins 35 229 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0885 Sed-Chr2:46386456 Sed02g0887 Sed-Chr2:46386456 3.40E-117 dispersed
Sed02g0884 Sed-Chr2:46386456 Sed02g0885 Sed-Chr2:46386456 7.80E-117 tandem
Sed02g0885 Sed-Chr2:46386456 Sed02g0886 Sed-Chr2:46386456 3.40E-117 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0885 K08486 - csv:101203075 376.326