Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0891 ATGGAGATGGTGGCCGAGAAGAAGGATTTTGATTCTGCAATCGACAACAACAAGCTCAACTCTGCTCAATCAGTTCATGATTCTTCGTATCCACCCTCGATCGCTGCCGATGAAACTGGCAGCAATAACAATTTCAAAGAAGCTGAAGATTTAAGTGAACGCGTTGCTCGAGATATCAAAGATGGCCTCCATCCCCTAAGGCACAAGTTTTCATTTTGGTTCACTCGCCGAACACCTGGAGTTCGGACTCAAACATCATATGAGGATAACATAAAAAAGATCGTGGACTTTAGCTCGGTTGAAGGTTTTTGGGTAAGCTATTGCCATTTGGCCCGTCCTGCTTCATTGCCAAGCCCAACAGATCTGCATCTCTTCAAGGAAGGAATACGCCCACTTTGGGAGGATTCTGCCAACTGCCACGGTGGAAAGTGGATAATACGATTTAAGAAAGTTGTATCTGGTCGATTTTGGGAAGATTTAGTTCTTGCATTAGTGGGAGACCAGCTTGATTTCGGCGATAGCATATGTGGTGCTGTGCTTAGCATTCGTTTCAATGAGGATATTTTGAGTGTCTGGAATCACAATGCAAATGATCATCAGGCGGTGATGGGTCTGCGGGATTCGATCAAACGACACTTAAAGCTACCACATGGGTACGTAATGGAATACAAACCTCACGATGCGTCTTTGCGTGATAACTCGTCATACAGAAACACATGGTTGCGAGGGTAA 732 44.81 MEMVAEKKDFDSAIDNNKLNSAQSVHDSSYPPSIAADETGSNNNFKEAEDLSERVARDIKDGLHPLRHKFSFWFTRRTPGVRTQTSYEDNIKKIVDFSSVEGFWVSYCHLARPASLPSPTDLHLFKEGIRPLWEDSANCHGGKWIIRFKKVVSGRFWEDLVLALVGDQLDFGDSICGAVLSIRFNEDILSVWNHNANDHQAVMGLRDSIKRHLKLPHGYVMEYKPHDASLRDNSSYRNTWLRG 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46422383 46427313 - Sed0027973.1 Sed02g0891 704559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0891 243 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 37 231 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER)
Sed02g0891 243 FunFam Eukaryotic translation initiation factor NCBP 36 236 - -
Sed02g0891 243 Gene3D RNA Cap, Translation Initiation Factor Eif4e 36 236 IPR023398 -
Sed02g0891 243 MobiDBLite consensus disorder prediction 18 42 - -
Sed02g0891 243 ProSitePatterns Eukaryotic initiation factor 4E signature. 121 144 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Sed02g0891 243 MobiDBLite consensus disorder prediction 18 49 - -
Sed02g0891 243 Pfam Eukaryotic initiation factor 4E 65 223 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Sed02g0891 243 SUPERFAMILY eIF4e-like 42 239 IPR023398 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0891 Sed-Chr2:46422383 Sed08g2704 Sed-Chr8:39011652 4.60E-27 dispersed
Sed12g1050 Sed-Chr12:6856684 Sed02g0891 Sed-Chr2:46422383 1.10E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0891 K03259 - csv:101204290 444.891