Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0902 ATGGTGGGTTTCCCGCCTCATGGAATGCAATCAATGCTTAAAGATGGCCACAAGCATTTCTCCGGCTTGGACGAGGCCGTCCTCAAGAACACCCACGCCTGCAAACAGCTTTCCACCATTACCAGAACTTCTCTCGGTCCCAATGGAATGAATAAGATGGTAATTAATCATCTAGACAAACCTTTTGTCATAAATGATGCTGCCACAATTGTCAATGAACTAGAGGTTCAGCATCCTGCAGCCAAAATTTTGGTTTTGGCAGGTAAAGCTCAGCAAGAAGAAATTGGCGATGGAGCTAATCTGACAATTTCGTTTGCTGGGGAGCTCGAAATAATCAGTGGCTACACAAAAGGAATCAATAAGACTATTGAGGTTTTGAATGAAGTAGTGGAGAAAGGTTCAGAGAACATGGATGTTCGTGACAAAGATCAAGTTATTTCGCGAATGAAAGCTGCTGTTGCCAGCAAGCAATTTGGACTAGAAGATTTTATTTGTTCTCTAGTTGCTGATGCATGCATTCAAGTTTGTCCCAAGAATCCAACAAATTTTAGTGTGGACAATGTTCGAGTTGCAAAGTTACCAGGAGGTGGTTTACATAATTCTTCAGTAGTGCGTGGCATGGTCTTGAAAAGTGATGCTGTTGGAAGTATAAAACGAATTGAGAAGGCTAAGGTTGCTGTATTTGTTAGTGGCGTTGATACATCTGCAACAGAAACAAAAGGAACCGTATTGATTCACACTGCTGAGGAGCTCCAAAGCTATGCAAAAACCGAGGAAGCTAAAGTTGAAGAGCTGATAAAAGCAGTTGCAGATTCAGGGGCTAAAGTAATTGTCAGTGGAGCAGCTGTTGGGGAGATGGCTTTACATTTTTGTGAGCGCTACAAGCTTATGGTGTTAAAAATTAGCTCAAAGTTTGAGTTGAGGAGATTTTGTCGTACAACTGGTGCTGTAGCTATGCCATTGGGTCATGTGGGTTCTGTTTCAGTTGAAGAAATTGGTGGTGCTAGGGAGACGGTTGTTAAGAATGAAGAGGGGGGTAACACCATATCAACAGTTGTGTTGCGAGCAAGTACTGCAATGGCGAGGGACAGCCGCACAGTACCTGGAGCCGCTGCTACTGAAATTGAGTTGGCAAGAAGAGTAAAGGAGTTCTCTTTTAAAGAAACGGGATTGGATCAGTATGCCATTGCAAAATTTGCAGAAAGTTTTGAGATGGTACCAAAAACCATTTCCGAAAATGCTGGGCTAAATGCAATGGAGATAATATCCTCATTGTATGCTGAGCATGCATCCGGAAATACCAGAGATGTTTCCACGTTGAATATCTGGGATCTTCACATTACTAACGAAACAACTCAATCTTTTGTTTCTCTTTCTCTAAAGACTCAACAACAAATAATTATGTCGAAACCAGCCGGAGGCCCCAGGAGAGGACAGCAGCCTGCGGGGATGGATGAGGACTAA 1464 42.83 MVGFPPHGMQSMLKDGHKHFSGLDEAVLKNTHACKQLSTITRTSLGPNGMNKMVINHLDKPFVINDAATIVNELEVQHPAAKILVLAGKAQQEEIGDGANLTISFAGELEIISGYTKGINKTIEVLNEVVEKGSENMDVRDKDQVISRMKAAVASKQFGLEDFICSLVADACIQVCPKNPTNFSVDNVRVAKLPGGGLHNSSVVRGMVLKSDAVGSIKRIEKAKVAVFVSGVDTSATETKGTVLIHTAEELQSYAKTEEAKVEELIKAVADSGAKVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMPLGHVGSVSVEEIGGARETVVKNEEGGNTISTVVLRASTAMARDSRTVPGAAATEIELARRVKEFSFKETGLDQYAIAKFAESFEMVPKTISENAGLNAMEIISSLYAEHASGNTRDVSTLNIWDLHITNETTQSFVSLSLKTQQQIIMSKPAGGPRRGQQPAGMDED 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46496790 46503256 + Sed0013215.1 Sed02g0902 704570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0902 487 CDD TCP1_theta 18 470 IPR012721 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)
Sed02g0902 487 SUPERFAMILY GroEL equatorial domain-like 20 448 IPR027413 -
Sed02g0902 487 SUPERFAMILY GroEL-intermediate domain like 138 362 IPR027410 -
Sed02g0902 487 Pfam TCP-1/cpn60 chaperonin family 355 434 IPR002423 GO:0005524(InterPro)
Sed02g0902 487 Pfam TCP-1/cpn60 chaperonin family 37 360 IPR002423 GO:0005524(InterPro)
Sed02g0902 487 SUPERFAMILY GroEL apical domain-like 201 355 IPR027409 -
Sed02g0902 487 Gene3D - 134 358 IPR027410 -
Sed02g0902 487 Gene3D GroEL 204 347 IPR027409 -
Sed02g0902 487 MobiDBLite consensus disorder prediction 468 487 - -
Sed02g0902 487 ProSitePatterns Chaperonins TCP-1 signature 1. 42 54 IPR002194 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)
Sed02g0902 487 Gene3D - 365 467 IPR027413 -
Sed02g0902 487 Gene3D - 30 133 IPR027413 -
Sed02g0902 487 PANTHER CHAPERONIN 24 467 IPR017998 GO:0005832(PANTHER)|GO:0006457(PANTHER)|GO:0051082(PANTHER)|GO:0140662(InterPro)
Sed02g0902 487 FunFam T-complex protein 1 subunit theta 205 349 - -
Sed02g0902 487 PRINTS Tailless complex polypeptide 1 (chaperone) signature 39 55 IPR017998 GO:0140662(InterPro)
Sed02g0902 487 PRINTS Tailless complex polypeptide 1 (chaperone) signature 61 79 IPR017998 GO:0140662(InterPro)
Sed02g0902 487 PRINTS Tailless complex polypeptide 1 (chaperone) signature 91 110 IPR017998 GO:0140662(InterPro)
Sed02g0902 487 Coils Coil 248 268 - -
Sed02g0902 487 NCBIfam T-complex protein 1 subunit theta 8 359 IPR012721 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0902 K09500 - - csv:101205260 800.431
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0902 Sed-Chr2:46496790 Sed11g1238 Sed-Chr11:28183484 3.10E-35 dispersed
Sed12g0470 Sed-Chr12:2822081 Sed02g0902 Sed-Chr2:46496790 1.10E-225 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g262 Blo04g00835 Blo16g00127 . . . Bpe13g00366 Bma06g00054 . Cmo13g01041 . . . . . . Cpe20g00139 . . . . . . . . . . . . . . . . . . . Lsi02g00217 Csa01g00699 Chy12g01413 Cme12g01847 . . Bda11g01779 . . Bpe15g00534 . . Sed02g0902 . . . Cma18g00056 . . Cpe09g01125 . Bhi08g01269 Tan05g2218 Cmetu05g1284 Lac10g0271 Hepe07g2368 . . Cla04g01064 Cam04g1107 Cec01g1621 Cco01g1668 Clacu04g1132 Cmu04g1116 Cre01g1417 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005676 2 1 2 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 39