Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0905 ATGGATTGCCAGCCGAAAATGGCGTCGGTTAATGGCGAATACGAGCAGGACAACTGTTCTAAACTTGGGGCTGAGTTATCTTCAACGCTCGACGACGACCTCTGTTTGCTCCACGCATCGACAATGGAAGTTGATGTGAGCTTGGAGTGGCTGTCAGCATTTGTGGAAGAATGCTTATCAGCCAAAGGAAGCAGCTTCCCCCTCCCACCCCCACAACAACTACCCACACAGCTCAACAATCCCCCAACGCCAAATTCGCTCCCGTCTTCTGACTTGCAGCCGTTCCCCCACCTCGCCGCAGTCCCTGGAAAGGCCAGAAGCAAGAGGAGACGGGTGCACCCCGACACAAGCATCCATCCTCTCACGGGTCGACGCCTTCATCAATTGAACCGGCTGCAGAACAAACACTCCTTACAGTTGACCTCTTCCTCTGCAGACCCTCTTCTGCTGCAACAGGACTATTGGTTGGCCGATAGCGAGCTGTTGCTACCGCATAAGGCTCGAGGAGAAGGAGATAATACAACAGCGAAGAAGAGTTTACAGATGCAGCAGCAGCAGCAACAGGGTGGTGGAGGGAGTGGGAGGAGATGCAGCCATTGTCAGGCACAGAAGACTCCACAGTGGAGGGGTGGACCATTGGGACCCAAGACATTATGCAATGCATGTGGAGTTAGATACAAGAAGTCAGGGAGTTTGCTACCAGAGTATAGACCAGCAAAGAGCCCTACTTTTGTGAGTTTCTTGCATTCCAATTCACACAAGAGAGTTATGGAGATGAGAATGATTGATGCCTCTTCTTCTACTTTTACTGCATTTCCCTCCTCTTCTTGA 831 51.38 MDCQPKMASVNGEYEQDNCSKLGAELSSTLDDDLCLLHASTMEVDVSLEWLSAFVEECLSAKGSSFPLPPPQQLPTQLNNPPTPNSLPSSDLQPFPHLAAVPGKARSKRRRVHPDTSIHPLTGRRLHQLNRLQNKHSLQLTSSSADPLLLQQDYWLADSELLLPHKARGEGDNTTAKKSLQMQQQQQQGGGGSGRRCSHCQAQKTPQWRGGPLGPKTLCNACGVRYKKSGSLLPEYRPAKSPTFVSFLHSNSHKRVMEMRMIDASSSTFTAFPSSS 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46512908 46514310 + Sed0007960.1 Sed02g0905 704573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0905 276 ProSiteProfiles GATA-type zinc finger domain profile. 191 234 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0905 276 CDD ZnF_GATA 196 244 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0905 276 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 192 256 - -
Sed02g0905 276 Pfam GATA zinc finger 197 231 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0905 276 ProSitePatterns GATA-type zinc finger domain. 197 222 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0905 276 FunFam GATA transcription factor 14 192 266 - -
Sed02g0905 276 PANTHER GATA TRANSCRIPTION FACTOR 23 261 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Sed02g0905 276 MobiDBLite consensus disorder prediction 66 125 - -
Sed02g0905 276 MobiDBLite consensus disorder prediction 174 205 - -
Sed02g0905 276 MobiDBLite consensus disorder prediction 167 208 - -
Sed02g0905 276 Gene3D - 193 259 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed02g0905 276 SMART GATA_3 191 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g0905 276 MobiDBLite consensus disorder prediction 68 82 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0905 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0905 Sed-Chr2:46512908 Sed03g1471 Sed-Chr3:9361522 4.70E-28 dispersed
Sed12g0471 Sed-Chr12:2832475 Sed02g0905 Sed-Chr2:46512908 5.20E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012334 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 0 0 1 1 1 1 2 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37578 PF00320 GATA 1.70E-16 CL0167 Sed TF