Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0908 ATGATGTACCATCAACAACATCAACATAGAGGTGGGATCATGAAGAGCAATGTTCATTCATCAGAGAGGCATTTGTTTTTACAAGGTGGTAATCATAATAATAATAACAACAACAATAATATGAATGGAGATTCAGGGCTTGTTCTTTCTACTGATGCTAAGCCTAGGCTTAAATGGACTCCTGATTTGCATGATCGCTTTGTTGAAGCAGTCAACCACCTTGGTGGCCCTGATAAGGCAACTCCTAAAACTGTGATGAAAATTATGGGTATTCCTGGACTTACCTTGTACCACTTGAAAAGCCATCTTCAGAAATACAGGCTGAGTAAGAATATAAATGGACAAGCAAATGGTGGAAATGGAACCAACAAAAGTGGTATGGCTTGGCATGTAGGAACTGTGCCGGTTTCTGGAGATCAAAGATTAGCGGACCCTAATGGACCGGCTCGAACCAACAACATAGCCATCACCCCACAGTCATCCAACCAGCCCAACAAAAACTTTCAGATCAATGAAGCAATACAAATGCAGATCGAAGTGCAGAAAAGGCTCCACGAACAACTTGAGGTACAACGGCACTTGCAGCTACGAATAGAAGCACAAGGGAAGTATCTACAAACCGTGCTAGAAAAAGCACAAGACACGATCGGAAGACAAGACTTAGGCACAGTGGGACTCGAAGCTGCAAAACTACAGCTCTCAGAACTTGTCTCAAAAGTCTCCACTCAATCCCTAACCTCAATAACATTTCCAGAACAAACCCATCCCCCTGCCTCCTCAATGGACAGTTGTCTAACCTCCTGCGACGGCTCGAAGAACCCGCACAACCAGCAACTCCTCGCCCTCCGACCCCATGCGGTTGCCACCGACCGAGCCTCCTCAGCCGCGGACGGCCACCATCATGGGCTGTCCATGAGCATTGGGCTGGCGCATGGCGACACGACGACTGGGGAAGGGACGTATAATGGGCATTCGCCATCGGAGGGCGAGAGGTTCGGGAGGAAGAGAAATAGAGTGGCGACTTCCTCGTTGGACTTGAATGCTGGTGAGGATCAACTACTCATGCATAATATTGATAACACGGCTAACGATACTTGCAACATGTTTGATCTTAATGGCTTTAGCTGA 1128 46.9 MMYHQQHQHRGGIMKSNVHSSERHLFLQGGNHNNNNNNNNMNGDSGLVLSTDAKPRLKWTPDLHDRFVEAVNHLGGPDKATPKTVMKIMGIPGLTLYHLKSHLQKYRLSKNINGQANGGNGTNKSGMAWHVGTVPVSGDQRLADPNGPARTNNIAITPQSSNQPNKNFQINEAIQMQIEVQKRLHEQLEVQRHLQLRIEAQGKYLQTVLEKAQDTIGRQDLGTVGLEAAKLQLSELVSKVSTQSLTSITFPEQTHPPASSMDSCLTSCDGSKNPHNQQLLALRPHAVATDRASSAADGHHHGLSMSIGLAHGDTTTGEGTYNGHSPSEGERFGRKRNRVATSSLDLNAGEDQLLMHNIDNTANDTCNMFDLNGFS 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46549166 46552986 - Sed0023070.1 Sed02g0908 704576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0908 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 111 IPR017930 -
Sed02g0908 375 SUPERFAMILY Homeodomain-like 53 109 IPR009057 -
Sed02g0908 375 Coils Coil 171 191 - -
Sed02g0908 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 22 296 IPR046955 GO:0003700(InterPro)
Sed02g0908 375 NCBIfam myb-like DNA-binding domain, SHAQKYF class 54 109 IPR006447 GO:0003677(InterPro)
Sed02g0908 375 Gene3D - 53 111 - -
Sed02g0908 375 MobiDBLite consensus disorder prediction 315 334 - -
Sed02g0908 375 MobiDBLite consensus disorder prediction 146 165 - -
Sed02g0908 375 MobiDBLite consensus disorder prediction 137 165 - -
Sed02g0908 375 Pfam Myb-like DNA-binding domain 56 107 IPR001005 -
Sed02g0908 375 FunFam Myb family transcription factor 53 111 - -
Sed02g0908 375 Pfam MYB-CC type transfactor, LHEQLE motif 169 214 IPR025756 -
Sed02g0908 375 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0908 Sed-Chr2:46549166 Sed12g0477 Sed-Chr12:2868192 4.20E-112 dispersed
Sed12g0382 Sed-Chr12:2306597 Sed02g0908 Sed-Chr2:46549166 2.10E-10 dispersed
Sed02g0908 Sed-Chr2:46549166 Sed02g0909 Sed-Chr2:46549166 2.30E-195 tandem
Sed12g0476 Sed-Chr12:2868192 Sed02g0908 Sed-Chr2:46549166 1.00E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37579 PF00249 Myb_DNA-binding 7.70E-08 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0908 - - - 0.0