Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0909 | ATGATGTACCATCAACAACATCAACATAGAGGTGGGATCATGAAGAGCAATGTTCATTCATCAGAGAGGCATTTGTTTTTACAAGGTGGTAATCATAATAATAATAACAACAACAATAATATGAATGGAGATTCAGGGCTTGTTCTTTCTACTGATGCTAAGCCTAGGCTTAAATGGACTCCTGATTTGCATGATCGCTTTGTTGAAGCAGTCAACCACCTTGGTGGCCCTGATAAGGCAACTCCTAAAACTGTGATGAAAATTATGGGTATTCCTGGACTTACCTTGTACCACTTGAAAAGCCATCTTCAGAAATACAGGCTGAGTAAGAATATAAATGGACAAGCAAATGGTGGAAATGGAACCAACAAAAGTGGAACTGTGCCGGTTTCTGGAGATCAAAGATTAGCGGACCCTAATGGACCGGCTCGAACCAACAACATAGCCATCACCCCACAGTCATCCAACCAGCCCAACAAAAACTTTCAGATCAATGAAGCAATACAAATGCAGATCGAAGTGCAGAAAAGGCTCCACGAACAACTTGAGGTACAACGGCACTTGCAGCTACGAATAGAAGCACAAGGGAAGTATCTACAAACCGTGCTAGAAAAAGCACAAGACACGATCGGAAGACAAGACTTAGGCACAGTGGGACTCGAAGCTGCAAAACTACAGCTCTCAGAACTTGTCTCAAAAGTCTCCACTCAATCCCTAACCTCAATAACATTTCCAGAACAAACCCATCCCCCTGCCTCCTCAATGGACAGTTGTCTAACCTCCTGCGACGGCTCGAAGAACCCGCACAACCAGCAACTCCTCGCCCTCCGACCCCATGCGGTTGCCACCGACCGAGCCTCCTCAGCCGCGGACGGCCACCATCATGGGCTGTCCATGAGCATTGGGCTGGCGCATGGCGACACGACGACTGGGGAAGGGACGTATAATGGGCATTCGCCATCGGAGGGCGAGAGGTTCGGGAGGAAGAGAAATAGAGTGGCGACTTCCTCGTTGGACTTGAATGCTGGTGAGGATCAACTACTCATGCATAATATTGATAACACGGCTAACGATACTTGCAACATGTTTGATCTTAATGGCTTTAGCTGA | 1110 | 46.85 | MMYHQQHQHRGGIMKSNVHSSERHLFLQGGNHNNNNNNNNMNGDSGLVLSTDAKPRLKWTPDLHDRFVEAVNHLGGPDKATPKTVMKIMGIPGLTLYHLKSHLQKYRLSKNINGQANGGNGTNKSGTVPVSGDQRLADPNGPARTNNIAITPQSSNQPNKNFQINEAIQMQIEVQKRLHEQLEVQRHLQLRIEAQGKYLQTVLEKAQDTIGRQDLGTVGLEAAKLQLSELVSKVSTQSLTSITFPEQTHPPASSMDSCLTSCDGSKNPHNQQLLALRPHAVATDRASSAADGHHHGLSMSIGLAHGDTTTGEGTYNGHSPSEGERFGRKRNRVATSSLDLNAGEDQLLMHNIDNTANDTCNMFDLNGFS | 369 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 46549166 | 46552986 | - | Sed0023070.2 | Sed02g0909 | 704577 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0909 | 369 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 51 | 111 | IPR017930 | - | |
Sed02g0909 | 369 | Pfam | Myb-like DNA-binding domain | 56 | 107 | IPR001005 | - | |
Sed02g0909 | 369 | MobiDBLite | consensus disorder prediction | 140 | 159 | - | - | |
Sed02g0909 | 369 | MobiDBLite | consensus disorder prediction | 309 | 328 | - | - | |
Sed02g0909 | 369 | Gene3D | - | 53 | 111 | - | - | |
Sed02g0909 | 369 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 54 | 109 | IPR006447 | GO:0003677(InterPro) | |
Sed02g0909 | 369 | FunFam | Myb family transcription factor | 53 | 111 | - | - | |
Sed02g0909 | 369 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 22 | 290 | IPR046955 | GO:0003700(InterPro) | |
Sed02g0909 | 369 | Coils | Coil | 165 | 185 | - | - | |
Sed02g0909 | 369 | MobiDBLite | consensus disorder prediction | 111 | 130 | - | - | |
Sed02g0909 | 369 | Pfam | MYB-CC type transfactor, LHEQLE motif | 163 | 208 | IPR025756 | - | |
Sed02g0909 | 369 | SUPERFAMILY | Homeodomain-like | 53 | 109 | IPR009057 | - | |
Sed02g0909 | 369 | MobiDBLite | consensus disorder prediction | 26 | 46 | - | - | |
Sed02g0909 | 369 | MobiDBLite | consensus disorder prediction | 111 | 159 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0909 | Sed-Chr2:46549166 | Sed12g0477 | Sed-Chr12:2868192 | 4.40E-114 | dispersed | |
Sed02g0908 | Sed-Chr2:46549166 | Sed02g0909 | Sed-Chr2:46549166 | 2.30E-195 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37580 | PF00249 | Myb_DNA-binding | 7.60E-08 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0909 | - | - | - | 0.0 |