Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0917 ATGGGGGCGATTGTGTGGGGATCAGCTCTTCTATTTTTGGCTTTCTTTTACTTGGCATCTTCTTATACTGATCCCCACGATTTTGCAGTGCTTCAATCTTTGAGAGATGGATGGCAAAATACGCCACCGAGCTGGGGAACATCAAACGATCCGTGTCTAGCGCCCTGGGAAGGAGTGGTTTGCAACAACTCAAGAGTAATTACATTGAAATTATCCAATATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAACTGAGATCATTGGACCTTTCATCCAATCGAGATCTCACTGGTTCGATCTCTCCCGCACTAGGGAATTTGTTGAATCTGGATATCTTGATCCTTTCTGCCTGTGGATTTAGTGGTAATATTCCAGAAGAATTGGGCAATCTTGCTGAGCTAACTTTCTTGTCTTTGCTTTCCAACAATTTCACTGGTTCCATTCCACCAACTTTGGGAAAACTCTCCAAACTCTATTGGCTAGACCTGGCAGATAATCAGTTGACTGGTGTTCTACCAGTTTCTACTTCCAAATCTCCGGGTTTGGATCTACTTTTCGAGGCTAAACATTTCCATTTCAGCAAAAATCAGTTATCAGGTCCCATTTCACCTAAACTTTTCAGCTCGAAGATCGCATTATTACACATATTATTTGACCAAAACAATTTTTCTGGGAGTATCCCACAAACATTGGGACTTGTTAAGACTCTTGAGGTTCTTCGACTTGATCGGAATTCTTTGACTGGAAATGTCCCATCCAATCTAAACAACCTAGCAAATGTCTTTGACTTGAATTTAGCCAACAACAAGCTAACAGGTCCACTACCAAACTTAACTCAAATGAGTTCGCTGAATTCCGTGGACCTTAGTCACAACTTATTTGAATCATCAGCAGCCCCGGAATGGTTCTCGAACCTACAATCTCTCACCAGTCTGATTGTTGAATATGGGTCACTACAAGGATATTTGCCCGTTGGAATCTTTAGCTTACCACACATGCAACAAATAAAACTAAAGAACAATGCATTAAGGGGGACATTAAATATGGGTGACAGCAGCCTACCGTTGCAGCTAGTTGATTTGCAAAATAACAATATTTCCTCAATTACTTCTGTTTCTGGTTATACTAACACTTTGATCCTGACAGGAAATCCTGTGTGCAAAGTTAGTGTCCACTCAGTTACAAACTATTGCAAGCTTCAACAACAAAAAACAGACCATTATTCTACCAGTTTTAACTGTGGAACTAAGTCATGTCCTCGCGATGAGAAGTTGAACCCGCAGAGTTGTGAATGCGCCTATCCATATGAAGGGACTTTATACTTTAGAGGACCTTCATTCAAGGAATTGTCCAATATATCCATCTTTCATTTGCTGGAAGGGAGCCTTTTTGAAAACTTCAAATTTGTGCCTTCTATTCAAAAGCCCTTCTTTAATGTTGATGATTATCTTCAGATGCAGCTTGCACTTTTTCCACCTTCCAGTAGGTATTTCAATAGGATAGACATTCAGAAGATCGGATTTGCTTTCGGCAGTCAACTTTACAAACCTCCCCACAAGTTTGGGCCATATTATTTCATTGCATCTCCTTATCCTTTTTCAGTGATGGGTAGTGGAACTTCAGCCAACACCGGACTGGTAATTGGAATAGCTGTTGGCTGTGCCTTTCTCGTTCTATGCCTCATTGGAGTTGGAATATACGCATATCGACGAAAGAGATGTGCAGAAAAGGCCAAGCAAAATGCTTTCTTGATATCAAGAGGAGATGATACTGGAGGTGCACCGCAATTAAAGGGAGCCAGATGGTTTTCTTTTGATGAACTTAAAAAATGCACGAATAATTTCTCGTTGAGTAATGAGATAGGATCCGGAGGATTTGGCAAGGTTTACAGAGGAACGCTGGCGGACCGAAAAGTAGTGGCAATCAAAAGAGCTCAACAAGGATCAATGCAGGGTTGCTATGAGTTCAAGACAGAAATTGAACTGCTTTCTCGAGTTCATCACAAGAATCTTGTTGGTCTAGTCGGATTTTGTTCTGAACAAGGAGAACAAATGCTTGTTTATGAACTCATGCCTAATGGAACACTTAGAGAAAGCCTAGCTGGGAAATCTGGTATTCATCTTGATTGGAAGAGAAGACTTCGTATTGCACTTGGGTCCGCCAAAGGATTGGCTTACTTGCATGAGCTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAACATTTTACTAGATGAACAGTTAAATGCAAAGGTTGCAGATTTTGGCTTATCCAAGCTTGTCTTAGACAGTGGAAAGGGACATGTTTCTACTCAAGTCAAAGGCACATTGGGTTACTTGGATCCTGAATATTACCAGAGTGAACAACTGACGGAGAAAAGCGACGTGTATAGTTTTGGAGTAGTGATGTTGGAACTACTAACTGCTAAGCTGCCAATTATAAAAGGGAAGTACATAGTTAATGAGATACGTATCTTGATGAATAAGAATGATGATGAATATTATGGTTTGAAGCATATAATGGATGCAACCATAATCAACAATAATACTACAAACCTAATCGGGTTCGAAAGATTCTTAGAGTTGGCTATGCAATGCGTTGACGAAGCAGCAGCAAATCGCCCCTCAATGAGTGAAGTGGTCAAGAAAATTGAGAACATTTTGATGTTGAGTTAG 2700 40.63 MGAIVWGSALLFLAFFYLASSYTDPHDFAVLQSLRDGWQNTPPSWGTSNDPCLAPWEGVVCNNSRVITLKLSNMGLKGKLGGDIGGLTELRSLDLSSNRDLTGSISPALGNLLNLDILILSACGFSGNIPEELGNLAELTFLSLLSNNFTGSIPPTLGKLSKLYWLDLADNQLTGVLPVSTSKSPGLDLLFEAKHFHFSKNQLSGPISPKLFSSKIALLHILFDQNNFSGSIPQTLGLVKTLEVLRLDRNSLTGNVPSNLNNLANVFDLNLANNKLTGPLPNLTQMSSLNSVDLSHNLFESSAAPEWFSNLQSLTSLIVEYGSLQGYLPVGIFSLPHMQQIKLKNNALRGTLNMGDSSLPLQLVDLQNNNISSITSVSGYTNTLILTGNPVCKVSVHSVTNYCKLQQQKTDHYSTSFNCGTKSCPRDEKLNPQSCECAYPYEGTLYFRGPSFKELSNISIFHLLEGSLFENFKFVPSIQKPFFNVDDYLQMQLALFPPSSRYFNRIDIQKIGFAFGSQLYKPPHKFGPYYFIASPYPFSVMGSGTSANTGLVIGIAVGCAFLVLCLIGVGIYAYRRKRCAEKAKQNAFLISRGDDTGGAPQLKGARWFSFDELKKCTNNFSLSNEIGSGGFGKVYRGTLADRKVVAIKRAQQGSMQGCYEFKTEIELLSRVHHKNLVGLVGFCSEQGEQMLVYELMPNGTLRESLAGKSGIHLDWKRRLRIALGSAKGLAYLHELANPPIIHRDIKSTNILLDEQLNAKVADFGLSKLVLDSGKGHVSTQVKGTLGYLDPEYYQSEQLTEKSDVYSFGVVMLELLTAKLPIIKGKYIVNEIRILMNKNDDEYYGLKHIMDATIINNNTTNLIGFERFLELAMQCVDEAAANRPSMSEVVKKIENILMLS 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46603252 46612635 + Sed0022518.1 Sed02g0917 704585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0917 899 ProSiteProfiles Protein kinase domain profile. 620 896 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0917 899 Gene3D Phosphorylase Kinase; domain 1 594 695 - -
Sed02g0917 899 FunFam Leucine-rich repeat protein kinase family protein 584 695 - -
Sed02g0917 899 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Sed02g0917 899 CDD STKc_IRAK 626 895 - -
Sed02g0917 899 ProSitePatterns Serine/Threonine protein kinases active-site signature. 740 752 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0917 899 FunFam Predicted protein 185 405 - -
Sed02g0917 899 PANTHER RECEPTOR-LIKE PROTEIN 55 43 893 - -
Sed02g0917 899 Pfam Leucine Rich Repeat 90 112 IPR001611 GO:0005515(InterPro)
Sed02g0917 899 Pfam Leucine Rich Repeat 242 263 IPR001611 GO:0005515(InterPro)
Sed02g0917 899 Pfam Leucine Rich Repeat 114 136 IPR001611 GO:0005515(InterPro)
Sed02g0917 899 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515(InterPro)
Sed02g0917 899 Gene3D Ribonuclease Inhibitor 26 187 IPR032675 -
Sed02g0917 899 SMART serkin_6 620 896 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0917 899 Gene3D Transferase(Phosphotransferase) domain 1 696 898 - -
Sed02g0917 899 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524(InterPro)
Sed02g0917 899 SUPERFAMILY Protein kinase-like (PK-like) 606 895 IPR011009 -
Sed02g0917 899 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 696 899 - -
Sed02g0917 899 SUPERFAMILY L domain-like 60 407 - -
Sed02g0917 899 Gene3D Ribonuclease Inhibitor 188 409 IPR032675 -
Sed02g0917 899 Pfam Protein tyrosine and serine/threonine kinase 622 892 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0917 899 ProSiteProfiles Leucine-rich repeat profile. 360 381 IPR001611 GO:0005515(InterPro)
Sed02g0917 899 FunFam Leucine-rich repeat family protein 26 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0147 Sed-Chr2:31344702 Sed02g0917 Sed-Chr2:46603252 2.7e-312 dispersed
Sed02g0917 Sed-Chr2:46603252 Sed04g1067 Sed-Chr4:15291957 0.00E+00 dispersed
Sed11g1590 Sed-Chr11:31421584 Sed02g0917 Sed-Chr2:46603252 8.00E-07 dispersed
Sed11g1591 Sed-Chr11:31421584 Sed02g0917 Sed-Chr2:46603252 6.30E-07 dispersed
Sed02g0917 Sed-Chr2:46603252 Sed02g0918 Sed-Chr2:46603252 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78807 PF07714 PK_Tyr_Ser-Thr 1.30E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0917 - - - 0.0