Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0917 | ATGGGGGCGATTGTGTGGGGATCAGCTCTTCTATTTTTGGCTTTCTTTTACTTGGCATCTTCTTATACTGATCCCCACGATTTTGCAGTGCTTCAATCTTTGAGAGATGGATGGCAAAATACGCCACCGAGCTGGGGAACATCAAACGATCCGTGTCTAGCGCCCTGGGAAGGAGTGGTTTGCAACAACTCAAGAGTAATTACATTGAAATTATCCAATATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAACTGAGATCATTGGACCTTTCATCCAATCGAGATCTCACTGGTTCGATCTCTCCCGCACTAGGGAATTTGTTGAATCTGGATATCTTGATCCTTTCTGCCTGTGGATTTAGTGGTAATATTCCAGAAGAATTGGGCAATCTTGCTGAGCTAACTTTCTTGTCTTTGCTTTCCAACAATTTCACTGGTTCCATTCCACCAACTTTGGGAAAACTCTCCAAACTCTATTGGCTAGACCTGGCAGATAATCAGTTGACTGGTGTTCTACCAGTTTCTACTTCCAAATCTCCGGGTTTGGATCTACTTTTCGAGGCTAAACATTTCCATTTCAGCAAAAATCAGTTATCAGGTCCCATTTCACCTAAACTTTTCAGCTCGAAGATCGCATTATTACACATATTATTTGACCAAAACAATTTTTCTGGGAGTATCCCACAAACATTGGGACTTGTTAAGACTCTTGAGGTTCTTCGACTTGATCGGAATTCTTTGACTGGAAATGTCCCATCCAATCTAAACAACCTAGCAAATGTCTTTGACTTGAATTTAGCCAACAACAAGCTAACAGGTCCACTACCAAACTTAACTCAAATGAGTTCGCTGAATTCCGTGGACCTTAGTCACAACTTATTTGAATCATCAGCAGCCCCGGAATGGTTCTCGAACCTACAATCTCTCACCAGTCTGATTGTTGAATATGGGTCACTACAAGGATATTTGCCCGTTGGAATCTTTAGCTTACCACACATGCAACAAATAAAACTAAAGAACAATGCATTAAGGGGGACATTAAATATGGGTGACAGCAGCCTACCGTTGCAGCTAGTTGATTTGCAAAATAACAATATTTCCTCAATTACTTCTGTTTCTGGTTATACTAACACTTTGATCCTGACAGGAAATCCTGTGTGCAAAGTTAGTGTCCACTCAGTTACAAACTATTGCAAGCTTCAACAACAAAAAACAGACCATTATTCTACCAGTTTTAACTGTGGAACTAAGTCATGTCCTCGCGATGAGAAGTTGAACCCGCAGAGTTGTGAATGCGCCTATCCATATGAAGGGACTTTATACTTTAGAGGACCTTCATTCAAGGAATTGTCCAATATATCCATCTTTCATTTGCTGGAAGGGAGCCTTTTTGAAAACTTCAAATTTGTGCCTTCTATTCAAAAGCCCTTCTTTAATGTTGATGATTATCTTCAGATGCAGCTTGCACTTTTTCCACCTTCCAGTAGGTATTTCAATAGGATAGACATTCAGAAGATCGGATTTGCTTTCGGCAGTCAACTTTACAAACCTCCCCACAAGTTTGGGCCATATTATTTCATTGCATCTCCTTATCCTTTTTCAGTGATGGGTAGTGGAACTTCAGCCAACACCGGACTGGTAATTGGAATAGCTGTTGGCTGTGCCTTTCTCGTTCTATGCCTCATTGGAGTTGGAATATACGCATATCGACGAAAGAGATGTGCAGAAAAGGCCAAGCAAAATGCTTTCTTGATATCAAGAGGAGATGATACTGGAGGTGCACCGCAATTAAAGGGAGCCAGATGGTTTTCTTTTGATGAACTTAAAAAATGCACGAATAATTTCTCGTTGAGTAATGAGATAGGATCCGGAGGATTTGGCAAGGTTTACAGAGGAACGCTGGCGGACCGAAAAGTAGTGGCAATCAAAAGAGCTCAACAAGGATCAATGCAGGGTTGCTATGAGTTCAAGACAGAAATTGAACTGCTTTCTCGAGTTCATCACAAGAATCTTGTTGGTCTAGTCGGATTTTGTTCTGAACAAGGAGAACAAATGCTTGTTTATGAACTCATGCCTAATGGAACACTTAGAGAAAGCCTAGCTGGGAAATCTGGTATTCATCTTGATTGGAAGAGAAGACTTCGTATTGCACTTGGGTCCGCCAAAGGATTGGCTTACTTGCATGAGCTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAACATTTTACTAGATGAACAGTTAAATGCAAAGGTTGCAGATTTTGGCTTATCCAAGCTTGTCTTAGACAGTGGAAAGGGACATGTTTCTACTCAAGTCAAAGGCACATTGGGTTACTTGGATCCTGAATATTACCAGAGTGAACAACTGACGGAGAAAAGCGACGTGTATAGTTTTGGAGTAGTGATGTTGGAACTACTAACTGCTAAGCTGCCAATTATAAAAGGGAAGTACATAGTTAATGAGATACGTATCTTGATGAATAAGAATGATGATGAATATTATGGTTTGAAGCATATAATGGATGCAACCATAATCAACAATAATACTACAAACCTAATCGGGTTCGAAAGATTCTTAGAGTTGGCTATGCAATGCGTTGACGAAGCAGCAGCAAATCGCCCCTCAATGAGTGAAGTGGTCAAGAAAATTGAGAACATTTTGATGTTGAGTTAG | 2700 | 40.63 | MGAIVWGSALLFLAFFYLASSYTDPHDFAVLQSLRDGWQNTPPSWGTSNDPCLAPWEGVVCNNSRVITLKLSNMGLKGKLGGDIGGLTELRSLDLSSNRDLTGSISPALGNLLNLDILILSACGFSGNIPEELGNLAELTFLSLLSNNFTGSIPPTLGKLSKLYWLDLADNQLTGVLPVSTSKSPGLDLLFEAKHFHFSKNQLSGPISPKLFSSKIALLHILFDQNNFSGSIPQTLGLVKTLEVLRLDRNSLTGNVPSNLNNLANVFDLNLANNKLTGPLPNLTQMSSLNSVDLSHNLFESSAAPEWFSNLQSLTSLIVEYGSLQGYLPVGIFSLPHMQQIKLKNNALRGTLNMGDSSLPLQLVDLQNNNISSITSVSGYTNTLILTGNPVCKVSVHSVTNYCKLQQQKTDHYSTSFNCGTKSCPRDEKLNPQSCECAYPYEGTLYFRGPSFKELSNISIFHLLEGSLFENFKFVPSIQKPFFNVDDYLQMQLALFPPSSRYFNRIDIQKIGFAFGSQLYKPPHKFGPYYFIASPYPFSVMGSGTSANTGLVIGIAVGCAFLVLCLIGVGIYAYRRKRCAEKAKQNAFLISRGDDTGGAPQLKGARWFSFDELKKCTNNFSLSNEIGSGGFGKVYRGTLADRKVVAIKRAQQGSMQGCYEFKTEIELLSRVHHKNLVGLVGFCSEQGEQMLVYELMPNGTLRESLAGKSGIHLDWKRRLRIALGSAKGLAYLHELANPPIIHRDIKSTNILLDEQLNAKVADFGLSKLVLDSGKGHVSTQVKGTLGYLDPEYYQSEQLTEKSDVYSFGVVMLELLTAKLPIIKGKYIVNEIRILMNKNDDEYYGLKHIMDATIINNNTTNLIGFERFLELAMQCVDEAAANRPSMSEVVKKIENILMLS | 899 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 46603252 | 46612635 | + | Sed0022518.1 | Sed02g0917 | 704585 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0917 | 899 | ProSiteProfiles | Protein kinase domain profile. | 620 | 896 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g0917 | 899 | Gene3D | Phosphorylase Kinase; domain 1 | 594 | 695 | - | - | |
Sed02g0917 | 899 | FunFam | Leucine-rich repeat protein kinase family protein | 584 | 695 | - | - | |
Sed02g0917 | 899 | Pfam | Leucine rich repeat N-terminal domain | 25 | 62 | IPR013210 | - | |
Sed02g0917 | 899 | CDD | STKc_IRAK | 626 | 895 | - | - | |
Sed02g0917 | 899 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 740 | 752 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g0917 | 899 | FunFam | Predicted protein | 185 | 405 | - | - | |
Sed02g0917 | 899 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 43 | 893 | - | - | |
Sed02g0917 | 899 | Pfam | Leucine Rich Repeat | 90 | 112 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0917 | 899 | Pfam | Leucine Rich Repeat | 242 | 263 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0917 | 899 | Pfam | Leucine Rich Repeat | 114 | 136 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0917 | 899 | Pfam | Leucine Rich Repeat | 139 | 160 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0917 | 899 | Gene3D | Ribonuclease Inhibitor | 26 | 187 | IPR032675 | - | |
Sed02g0917 | 899 | SMART | serkin_6 | 620 | 896 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g0917 | 899 | Gene3D | Transferase(Phosphotransferase) domain 1 | 696 | 898 | - | - | |
Sed02g0917 | 899 | ProSitePatterns | Protein kinases ATP-binding region signature. | 626 | 648 | IPR017441 | GO:0005524(InterPro) | |
Sed02g0917 | 899 | SUPERFAMILY | Protein kinase-like (PK-like) | 606 | 895 | IPR011009 | - | |
Sed02g0917 | 899 | FunFam | LRR receptor-like serine/threonine-protein kinase HSL2 | 696 | 899 | - | - | |
Sed02g0917 | 899 | SUPERFAMILY | L domain-like | 60 | 407 | - | - | |
Sed02g0917 | 899 | Gene3D | Ribonuclease Inhibitor | 188 | 409 | IPR032675 | - | |
Sed02g0917 | 899 | Pfam | Protein tyrosine and serine/threonine kinase | 622 | 892 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g0917 | 899 | ProSiteProfiles | Leucine-rich repeat profile. | 360 | 381 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0917 | 899 | FunFam | Leucine-rich repeat family protein | 26 | 182 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0147 | Sed-Chr2:31344702 | Sed02g0917 | Sed-Chr2:46603252 | 2.7e-312 | dispersed | |
Sed02g0917 | Sed-Chr2:46603252 | Sed04g1067 | Sed-Chr4:15291957 | 0.00E+00 | dispersed | |
Sed11g1590 | Sed-Chr11:31421584 | Sed02g0917 | Sed-Chr2:46603252 | 8.00E-07 | dispersed | |
Sed11g1591 | Sed-Chr11:31421584 | Sed02g0917 | Sed-Chr2:46603252 | 6.30E-07 | dispersed | |
Sed02g0917 | Sed-Chr2:46603252 | Sed02g0918 | Sed-Chr2:46603252 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78807 | PF07714 | PK_Tyr_Ser-Thr | 1.30E-48 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0917 | - | - | - | 0.0 |