Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0918 | ATGTTTTATTTATCCTGCCTGTGCTCTTTGTTTTTGCTTTTTTTGTTTGTTGTCCTTTTTGTTTCCTTAATCTCCCATTGGAATCAGTACTCAATTTTTTTTTCACGAGTACACTGCCATAGAACTCAACGATCTCACCGACCTGTTCAACACCATACTTCGATTTTGCTCTTCGAAAAGGAACATTGGGGGAGGAGAGGAATAGAATATGGAATACAGAGTACTCAGCTATCTTTTGTTGCAGTGCTTCAATCTTTGAGAGATGGATGGCAAAATACGCCACCGAGCTGGGGAACATCAAACGATCCGTGTCTAGCGCCCTGGGAAGGAGTGGTTTGCAACAACTCAAGAGTAATTACATTGAAATTATCCAATATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAACTGAGATCATTGGACCTTTCATCCAATCGAGATCTCACTGGTTCGATCTCTCCCGCACTAGGGAATTTGTTGAATCTGGATATCTTGATCCTTTCTGCCTGTGGATTTAGTGGTAATATTCCAGAAGAATTGGGCAATCTTGCTGAGCTAACTTTCTTGTCTTTGCTTTCCAACAATTTCACTGGTTCCATTCCACCAACTTTGGGAAAACTCTCCAAACTCTATTGGCTAGACCTGGCAGATAATCAGTTGACTGGTGTTCTACCAGTTTCTACTTCCAAATCTCCGGGTTTGGATCTACTTTTCGAGGCTAAACATTTCCATTTCAGCAAAAATCAGTTATCAGGTCCCATTTCACCTAAACTTTTCAGCTCGAAGATCGCATTATTACACATATTATTTGACCAAAACAATTTTTCTGGGAGTATCCCACAAACATTGGGACTTGTTAAGACTCTTGAGGTTCTTCGACTTGATCGGAATTCTTTGACTGGAAATGTCCCATCCAATCTAAACAACCTAGCAAATGTCTTTGACTTGAATTTAGCCAACAACAAGCTAACAGGTCCACTACCAAACTTAACTCAAATGAGTTCGCTGAATTCCGTGGACCTTAGTCACAACTTATTTGAATCATCAGCAGCCCCGGAATGGTTCTCGAACCTACAATCTCTCACCAGTCTGATTGTTGAATATGGGTCACTACAAGGATATTTGCCCGTTGGAATCTTTAGCTTACCACACATGCAACAAATAAAACTAAAGAACAATGCATTAAGGGGGACATTAAATATGGGTGACAGCAGCCTACCGTTGCAGCTAGTTGATTTGCAAAATAACAATATTTCCTCAATTACTTCTGTTTCTGGTTATACTAACACTTTGATCCTGACAGGAAATCCTGTGTGCAAAGTTAGTGTCCACTCAGTTACAAACTATTGCAAGCTTCAACAACAAAAAACAGACCATTATTCTACCAGTTTTAACTGTGGAACTAAGTCATGTCCTCGCGATGAGAAGTTGAACCCGCAGAGTTGTGAATGCGCCTATCCATATGAAGGGACTTTATACTTTAGAGGACCTTCATTCAAGGAATTGTCCAATATATCCATCTTTCATTTGCTGGAAGGGAGCCTTTTTGAAAACTTCAAATTTGTGCCTTCTATTCAAAAGCCCTTCTTTAATGTTGATGATTATCTTCAGATGCAGCTTGCACTTTTTCCACCTTCCAGTAGGTATTTCAATAGGATAGACATTCAGAAGATCGGATTTGCTTTCGGCAGTCAACTTTACAAACCTCCCCACAAGTTTGGGCCATATTATTTCATTGCATCTCCTTATCCTTTTTCAGTGATGGGTAGTGGAACTTCAGCCAACACCGGACTGGTAATTGGAATAGCTGTTGGCTGTGCCTTTCTCGTTCTATGCCTCATTGGAGTTGGAATATACGCATATCGACGAAAGAGATGTGCAGAAAAGGCCAAGCAAAATGCTTTCTTGATATCAAGAGGAGATGATACTGGAGGTGCACCGCAATTAAAGGGAGCCAGATGGTTTTCTTTTGATGAACTTAAAAAATGCACGAATAATTTCTCGTTGAGTAATGAGATAGGATCCGGAGGATTTGGCAAGGTTTACAGAGGAACGCTGGCGGACCGAAAAGTAGTGGCAATCAAAAGAGCTCAACAAGGATCAATGCAGGGTTGCTATGAGTTCAAGACAGAAATTGAACTGCTTTCTCGAGTTCATCACAAGAATCTTGTTGGTCTAGTCGGATTTTGTTCTGAACAAGGAGAACAAATGCTTGTTTATGAACTCATGCCTAATGGAACACTTAGAGAAAGCCTAGCTGGGAAATCTGGTATTCATCTTGATTGGAAGAGAAGACTTCGTATTGCACTTGGGTCCGCCAAAGGATTGGCTTACTTGCATGAGCTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAACATTTTACTAGATGAACAGTTAAATGCAAAGGTTGCAGATTTTGGCTTATCCAAGCTTGTCTTAGACAGTGGAAAGGGACATGTTTCTACTCAAGTCAAAGGCACATTGGGTTACTTGGATCCTGAATATTACCAGAGTGAACAACTGACGGAGAAAAGCGACGTGTATAGTTTTGGAGTAGTGATGTTGGAACTACTAACTGCTAAGCTGCCAATTATAAAAGGGAAGTACATAGTTAATGAGATACGTATCTTGATGAATAAGAATGATGATGAATATTATGGTTTGAAGCATATAATGGATGCAACCATAATCAACAATAATACTACAAACCTAATCGGGTTCGAAAGATTCTTAGAGTTGGCTATGCAATGCGTTGACGAAGCAGCAGCAAATCGCCCCTCAATGAGTGAAGTGGTCAAGAAAATTGAGAACATTTTGATGTTGAGTTAG | 2856 | 40.3 | MFYLSCLCSLFLLFLFVVLFVSLISHWNQYSIFFSRVHCHRTQRSHRPVQHHTSILLFEKEHWGRRGIEYGIQSTQLSFVAVLQSLRDGWQNTPPSWGTSNDPCLAPWEGVVCNNSRVITLKLSNMGLKGKLGGDIGGLTELRSLDLSSNRDLTGSISPALGNLLNLDILILSACGFSGNIPEELGNLAELTFLSLLSNNFTGSIPPTLGKLSKLYWLDLADNQLTGVLPVSTSKSPGLDLLFEAKHFHFSKNQLSGPISPKLFSSKIALLHILFDQNNFSGSIPQTLGLVKTLEVLRLDRNSLTGNVPSNLNNLANVFDLNLANNKLTGPLPNLTQMSSLNSVDLSHNLFESSAAPEWFSNLQSLTSLIVEYGSLQGYLPVGIFSLPHMQQIKLKNNALRGTLNMGDSSLPLQLVDLQNNNISSITSVSGYTNTLILTGNPVCKVSVHSVTNYCKLQQQKTDHYSTSFNCGTKSCPRDEKLNPQSCECAYPYEGTLYFRGPSFKELSNISIFHLLEGSLFENFKFVPSIQKPFFNVDDYLQMQLALFPPSSRYFNRIDIQKIGFAFGSQLYKPPHKFGPYYFIASPYPFSVMGSGTSANTGLVIGIAVGCAFLVLCLIGVGIYAYRRKRCAEKAKQNAFLISRGDDTGGAPQLKGARWFSFDELKKCTNNFSLSNEIGSGGFGKVYRGTLADRKVVAIKRAQQGSMQGCYEFKTEIELLSRVHHKNLVGLVGFCSEQGEQMLVYELMPNGTLRESLAGKSGIHLDWKRRLRIALGSAKGLAYLHELANPPIIHRDIKSTNILLDEQLNAKVADFGLSKLVLDSGKGHVSTQVKGTLGYLDPEYYQSEQLTEKSDVYSFGVVMLELLTAKLPIIKGKYIVNEIRILMNKNDDEYYGLKHIMDATIINNNTTNLIGFERFLELAMQCVDEAAANRPSMSEVVKKIENILMLS | 951 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 46603252 | 46612635 | + | Sed0022518.2 | Sed02g0918 | 704586 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0918 | 951 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 90 | 945 | - | - | |
Sed02g0918 | 951 | FunFam | Predicted protein | 237 | 457 | - | - | |
Sed02g0918 | 951 | Gene3D | Phosphorylase Kinase; domain 1 | 646 | 747 | - | - | |
Sed02g0918 | 951 | Gene3D | Ribonuclease Inhibitor | 239 | 453 | IPR032675 | - | |
Sed02g0918 | 951 | ProSiteProfiles | Protein kinase domain profile. | 672 | 948 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g0918 | 951 | Pfam | Leucine Rich Repeat | 166 | 188 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0918 | 951 | Pfam | Leucine Rich Repeat | 294 | 315 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0918 | 951 | Pfam | Leucine Rich Repeat | 142 | 164 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0918 | 951 | Pfam | Leucine Rich Repeat | 191 | 212 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0918 | 951 | CDD | STKc_IRAK | 678 | 947 | - | - | |
Sed02g0918 | 951 | Pfam | Leucine rich repeat N-terminal domain | 81 | 114 | IPR013210 | - | |
Sed02g0918 | 951 | ProSiteProfiles | Leucine-rich repeat profile. | 412 | 433 | IPR001611 | GO:0005515(InterPro) | |
Sed02g0918 | 951 | FunFam | LRR receptor-like serine/threonine-protein kinase HSL2 | 748 | 951 | - | - | |
Sed02g0918 | 951 | SUPERFAMILY | L domain-like | 112 | 459 | - | - | |
Sed02g0918 | 951 | Gene3D | Ribonuclease Inhibitor | 77 | 238 | IPR032675 | - | |
Sed02g0918 | 951 | FunFam | Leucine-rich repeat protein kinase family protein | 636 | 747 | - | - | |
Sed02g0918 | 951 | SUPERFAMILY | Protein kinase-like (PK-like) | 658 | 947 | IPR011009 | - | |
Sed02g0918 | 951 | Pfam | Protein tyrosine and serine/threonine kinase | 674 | 944 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g0918 | 951 | Gene3D | Transferase(Phosphotransferase) domain 1 | 748 | 950 | - | - | |
Sed02g0918 | 951 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 792 | 804 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g0918 | 951 | ProSitePatterns | Protein kinases ATP-binding region signature. | 678 | 700 | IPR017441 | GO:0005524(InterPro) | |
Sed02g0918 | 951 | FunFam | Leucine-rich repeat family protein | 79 | 235 | - | - | |
Sed02g0918 | 951 | SMART | serkin_6 | 672 | 948 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0918 | Sed-Chr2:46603252 | Sed04g1067 | Sed-Chr4:15291957 | 5.5e-310 | dispersed | |
Sed02g0917 | Sed-Chr2:46603252 | Sed02g0918 | Sed-Chr2:46603252 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78808 | PF07714 | PK_Tyr_Ser-Thr | 1.40E-48 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0918 | - | - | - | 0.0 |