Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0918 ATGTTTTATTTATCCTGCCTGTGCTCTTTGTTTTTGCTTTTTTTGTTTGTTGTCCTTTTTGTTTCCTTAATCTCCCATTGGAATCAGTACTCAATTTTTTTTTCACGAGTACACTGCCATAGAACTCAACGATCTCACCGACCTGTTCAACACCATACTTCGATTTTGCTCTTCGAAAAGGAACATTGGGGGAGGAGAGGAATAGAATATGGAATACAGAGTACTCAGCTATCTTTTGTTGCAGTGCTTCAATCTTTGAGAGATGGATGGCAAAATACGCCACCGAGCTGGGGAACATCAAACGATCCGTGTCTAGCGCCCTGGGAAGGAGTGGTTTGCAACAACTCAAGAGTAATTACATTGAAATTATCCAATATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAACTGAGATCATTGGACCTTTCATCCAATCGAGATCTCACTGGTTCGATCTCTCCCGCACTAGGGAATTTGTTGAATCTGGATATCTTGATCCTTTCTGCCTGTGGATTTAGTGGTAATATTCCAGAAGAATTGGGCAATCTTGCTGAGCTAACTTTCTTGTCTTTGCTTTCCAACAATTTCACTGGTTCCATTCCACCAACTTTGGGAAAACTCTCCAAACTCTATTGGCTAGACCTGGCAGATAATCAGTTGACTGGTGTTCTACCAGTTTCTACTTCCAAATCTCCGGGTTTGGATCTACTTTTCGAGGCTAAACATTTCCATTTCAGCAAAAATCAGTTATCAGGTCCCATTTCACCTAAACTTTTCAGCTCGAAGATCGCATTATTACACATATTATTTGACCAAAACAATTTTTCTGGGAGTATCCCACAAACATTGGGACTTGTTAAGACTCTTGAGGTTCTTCGACTTGATCGGAATTCTTTGACTGGAAATGTCCCATCCAATCTAAACAACCTAGCAAATGTCTTTGACTTGAATTTAGCCAACAACAAGCTAACAGGTCCACTACCAAACTTAACTCAAATGAGTTCGCTGAATTCCGTGGACCTTAGTCACAACTTATTTGAATCATCAGCAGCCCCGGAATGGTTCTCGAACCTACAATCTCTCACCAGTCTGATTGTTGAATATGGGTCACTACAAGGATATTTGCCCGTTGGAATCTTTAGCTTACCACACATGCAACAAATAAAACTAAAGAACAATGCATTAAGGGGGACATTAAATATGGGTGACAGCAGCCTACCGTTGCAGCTAGTTGATTTGCAAAATAACAATATTTCCTCAATTACTTCTGTTTCTGGTTATACTAACACTTTGATCCTGACAGGAAATCCTGTGTGCAAAGTTAGTGTCCACTCAGTTACAAACTATTGCAAGCTTCAACAACAAAAAACAGACCATTATTCTACCAGTTTTAACTGTGGAACTAAGTCATGTCCTCGCGATGAGAAGTTGAACCCGCAGAGTTGTGAATGCGCCTATCCATATGAAGGGACTTTATACTTTAGAGGACCTTCATTCAAGGAATTGTCCAATATATCCATCTTTCATTTGCTGGAAGGGAGCCTTTTTGAAAACTTCAAATTTGTGCCTTCTATTCAAAAGCCCTTCTTTAATGTTGATGATTATCTTCAGATGCAGCTTGCACTTTTTCCACCTTCCAGTAGGTATTTCAATAGGATAGACATTCAGAAGATCGGATTTGCTTTCGGCAGTCAACTTTACAAACCTCCCCACAAGTTTGGGCCATATTATTTCATTGCATCTCCTTATCCTTTTTCAGTGATGGGTAGTGGAACTTCAGCCAACACCGGACTGGTAATTGGAATAGCTGTTGGCTGTGCCTTTCTCGTTCTATGCCTCATTGGAGTTGGAATATACGCATATCGACGAAAGAGATGTGCAGAAAAGGCCAAGCAAAATGCTTTCTTGATATCAAGAGGAGATGATACTGGAGGTGCACCGCAATTAAAGGGAGCCAGATGGTTTTCTTTTGATGAACTTAAAAAATGCACGAATAATTTCTCGTTGAGTAATGAGATAGGATCCGGAGGATTTGGCAAGGTTTACAGAGGAACGCTGGCGGACCGAAAAGTAGTGGCAATCAAAAGAGCTCAACAAGGATCAATGCAGGGTTGCTATGAGTTCAAGACAGAAATTGAACTGCTTTCTCGAGTTCATCACAAGAATCTTGTTGGTCTAGTCGGATTTTGTTCTGAACAAGGAGAACAAATGCTTGTTTATGAACTCATGCCTAATGGAACACTTAGAGAAAGCCTAGCTGGGAAATCTGGTATTCATCTTGATTGGAAGAGAAGACTTCGTATTGCACTTGGGTCCGCCAAAGGATTGGCTTACTTGCATGAGCTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAACATTTTACTAGATGAACAGTTAAATGCAAAGGTTGCAGATTTTGGCTTATCCAAGCTTGTCTTAGACAGTGGAAAGGGACATGTTTCTACTCAAGTCAAAGGCACATTGGGTTACTTGGATCCTGAATATTACCAGAGTGAACAACTGACGGAGAAAAGCGACGTGTATAGTTTTGGAGTAGTGATGTTGGAACTACTAACTGCTAAGCTGCCAATTATAAAAGGGAAGTACATAGTTAATGAGATACGTATCTTGATGAATAAGAATGATGATGAATATTATGGTTTGAAGCATATAATGGATGCAACCATAATCAACAATAATACTACAAACCTAATCGGGTTCGAAAGATTCTTAGAGTTGGCTATGCAATGCGTTGACGAAGCAGCAGCAAATCGCCCCTCAATGAGTGAAGTGGTCAAGAAAATTGAGAACATTTTGATGTTGAGTTAG 2856 40.3 MFYLSCLCSLFLLFLFVVLFVSLISHWNQYSIFFSRVHCHRTQRSHRPVQHHTSILLFEKEHWGRRGIEYGIQSTQLSFVAVLQSLRDGWQNTPPSWGTSNDPCLAPWEGVVCNNSRVITLKLSNMGLKGKLGGDIGGLTELRSLDLSSNRDLTGSISPALGNLLNLDILILSACGFSGNIPEELGNLAELTFLSLLSNNFTGSIPPTLGKLSKLYWLDLADNQLTGVLPVSTSKSPGLDLLFEAKHFHFSKNQLSGPISPKLFSSKIALLHILFDQNNFSGSIPQTLGLVKTLEVLRLDRNSLTGNVPSNLNNLANVFDLNLANNKLTGPLPNLTQMSSLNSVDLSHNLFESSAAPEWFSNLQSLTSLIVEYGSLQGYLPVGIFSLPHMQQIKLKNNALRGTLNMGDSSLPLQLVDLQNNNISSITSVSGYTNTLILTGNPVCKVSVHSVTNYCKLQQQKTDHYSTSFNCGTKSCPRDEKLNPQSCECAYPYEGTLYFRGPSFKELSNISIFHLLEGSLFENFKFVPSIQKPFFNVDDYLQMQLALFPPSSRYFNRIDIQKIGFAFGSQLYKPPHKFGPYYFIASPYPFSVMGSGTSANTGLVIGIAVGCAFLVLCLIGVGIYAYRRKRCAEKAKQNAFLISRGDDTGGAPQLKGARWFSFDELKKCTNNFSLSNEIGSGGFGKVYRGTLADRKVVAIKRAQQGSMQGCYEFKTEIELLSRVHHKNLVGLVGFCSEQGEQMLVYELMPNGTLRESLAGKSGIHLDWKRRLRIALGSAKGLAYLHELANPPIIHRDIKSTNILLDEQLNAKVADFGLSKLVLDSGKGHVSTQVKGTLGYLDPEYYQSEQLTEKSDVYSFGVVMLELLTAKLPIIKGKYIVNEIRILMNKNDDEYYGLKHIMDATIINNNTTNLIGFERFLELAMQCVDEAAANRPSMSEVVKKIENILMLS 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46603252 46612635 + Sed0022518.2 Sed02g0918 704586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0918 951 PANTHER RECEPTOR-LIKE PROTEIN 55 90 945 - -
Sed02g0918 951 FunFam Predicted protein 237 457 - -
Sed02g0918 951 Gene3D Phosphorylase Kinase; domain 1 646 747 - -
Sed02g0918 951 Gene3D Ribonuclease Inhibitor 239 453 IPR032675 -
Sed02g0918 951 ProSiteProfiles Protein kinase domain profile. 672 948 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g0918 951 Pfam Leucine Rich Repeat 166 188 IPR001611 GO:0005515(InterPro)
Sed02g0918 951 Pfam Leucine Rich Repeat 294 315 IPR001611 GO:0005515(InterPro)
Sed02g0918 951 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515(InterPro)
Sed02g0918 951 Pfam Leucine Rich Repeat 191 212 IPR001611 GO:0005515(InterPro)
Sed02g0918 951 CDD STKc_IRAK 678 947 - -
Sed02g0918 951 Pfam Leucine rich repeat N-terminal domain 81 114 IPR013210 -
Sed02g0918 951 ProSiteProfiles Leucine-rich repeat profile. 412 433 IPR001611 GO:0005515(InterPro)
Sed02g0918 951 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 748 951 - -
Sed02g0918 951 SUPERFAMILY L domain-like 112 459 - -
Sed02g0918 951 Gene3D Ribonuclease Inhibitor 77 238 IPR032675 -
Sed02g0918 951 FunFam Leucine-rich repeat protein kinase family protein 636 747 - -
Sed02g0918 951 SUPERFAMILY Protein kinase-like (PK-like) 658 947 IPR011009 -
Sed02g0918 951 Pfam Protein tyrosine and serine/threonine kinase 674 944 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0918 951 Gene3D Transferase(Phosphotransferase) domain 1 748 950 - -
Sed02g0918 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g0918 951 ProSitePatterns Protein kinases ATP-binding region signature. 678 700 IPR017441 GO:0005524(InterPro)
Sed02g0918 951 FunFam Leucine-rich repeat family protein 79 235 - -
Sed02g0918 951 SMART serkin_6 672 948 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0918 Sed-Chr2:46603252 Sed04g1067 Sed-Chr4:15291957 5.5e-310 dispersed
Sed02g0917 Sed-Chr2:46603252 Sed02g0918 Sed-Chr2:46603252 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78808 PF07714 PK_Tyr_Ser-Thr 1.40E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0918 - - - 0.0