Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed02g0928 | ATGGCCGGCGAAACCCCCGACGGCAGCAACTCCGGCATCCCGCCGTCGACGCCGGATTCCCCCACCACCTCCGCCAATTTCGAGACAGACCAGCTCCCTCATCTCAGCCACACCTCCGACAACTACCCCGATGAGGACGAAGCCGCCGTCGATCCCCGCATCGTTCAAGACGAGCCTGACCTCGAAGAAGAGGAGGAAGGAGAAGATCTCTACCACGACAATTTCTTGGACGATTATCGGCGGATGGATGATCATGACCAGTACGAGTCCTTGGGTCTGGATGATTCATTGGAGGATGAGAGGGATTTGGATCAGATTATGGAGGACCGACGAGCTGCCGAGATGGAACTTGAGACTCGCGATGCTCAGTTTACCCGTCGGAAGCTTCCGGAGTTGTTACATGATCATGACTCTGAGGATGAGAATTACAGGCCTTCAAAAAGATCAAGAGCTGATTTTCGTCCTCCAGCTGCAGCAAGAAGCTATGATGACATTGATGGTATGCAAAGTTCTCCTGGTAGATCACAAAGGGAAAACTCACGAGATGATGTGCCCATGACTGATCATTCTGTTGATGACCAATATGAGGATGAAGATGACGATGAAAATGAGAATGAGATGTATCGAGTTCAAGGGCCACTTAGAGAACATGTTACCATGGATGCAGTTCGGCGCTTTATAGGCAAAAAGTTCAAGAAATTCTTAGAAACTTATGTGAATCCGAAGAGTGGAAATGGGGAACTTGAGTACATGCGACTGATAAATGAGATGGTTTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAACAGTTTATCTTTGTTCATCCAAATATTGCAATCTGGTTGGCTGATGCACCCCAACCCGTCTTAGAAGTAATGGAAGATATTGCAAAGAAGGTTGTGTTTGACATACATCCGAACTACAAAAATATTCACCAAAAGATCTATGTTCGCATCAATAATTTACCAGTCTATGATCAGATTCGAAATATTAGGCAAATTCATCTGAATACCATGATTCGCATTGGGGGCGTAGTGACTCGGCGCTCTGGTGTGTTCCCCCAGTTGCAGCAGGTTAAGTATGATTGTAATAAATGTGGAACAATATTGGGACCATTTTTTCAGAATTCTTATTCAGAGGTCAAGGTCGATTCTTGTCCTGAGTGCCAATCGAAAGGACCATTCACAGTAAATGTTGAGCAGACTATATACAGAAACTACCAAAAGCTGACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGTCGACTTCCAAGATACAAGGAAGTGATACTGTTAAATGATCTAATTGATTGTGCCCGTCCTGGGGAAGAAATTGAAGTCACAGGCATTTATACAAATAATTTTGACTTGTCTCTGAATACAAAGAATGGTTTTCCTGTATTTTCCACGGTTGTTGAAGCAAATTACGTTACCAAGAAGCAAGATCTATTCTCTGCATACAAGCTCACCCAGGAAGACAAAGAAGAGATTGAGAAGCTGTCTAAAGACCCTAGAATTGGAGAGAGGATTATCAAGTCTATTGCACCATCAATATATGGTCATGAGGACATAAAAACTGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACATCGGTTACGAGGTGATATCAATGTACTTTTGCTAGGTGATCCTGGCACAGCCAAATCTCAATTTCTCAAGTATGTTGAAAAGACAGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCAGCTGTAGGACTAACAGCAGCAGTGCACAAGGATCCTGTCACGAGGGAGTGGACCCTTGAAGGAGGTGCACTTGTGTTAGCTGATAGAGGAATTTGTCTTATTGATGAGTTTGACAAAATGAATGATCAGGACAGGGTGAGTATCCATGAAGCAATGGAGCAGCAAAGCATTAGCATATCAAAAGCTGGAATAGTCACCTCTCTTCAAGCCAGATGTTCTGTCATTGCTGCTGCCAATCCTGTTGGAGGAAGGTACGACTCCTCAAAAACATTTTCACAAAATGTAGAGCTGACAGATCCTATCATTTCTCGGTTTGACATTCTCTGTGTTGTTAAGGATGTGGTAGACTCTGTAACAGATGAGTTGCTTGCTATGTTTGTGGTTGATAGTCATTTCAAATCACAGCCAAAGGGCGGCAATCTTGACGATAAGTCTATAAATGAATCTCAGGAGGACAGTCAAGACACTACAAGGCCAGTGGATCCAGAGGTGCTTCCCCAAGATCTGCTGAAGAAGTACATAACTTATGCTAAGTTGAATGTATTTCCTAGGTTGCATGATGCTGATATGGACAAGTTAACACATGTCTATGCAGAATTAAGAAGGGAATCTTCTCATGGGCAAGGAGTTCCTATTGCTGTTAGGCACATAGAGTCAATGATACGGATGTCTGAAGCACATGCAAGAATGCACCTCAGACAGCATGTCACACAAGAAGATGTTGATATGGCAATCCGTGTGTTACTTGATTCTTTCATTTCGACCCAAAAATTTGGGGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTATATGACTTTCAAGAAGGATTACAACGAACTGCTGCTACATCTTCTCCGAGAACTCGTGAAGAATGCACTTCACTTTGAGGAAATTGTTCGTGGATCGACATCGGAGCTTGCACACATCAATGTGAAATTGGAAGATCTACAAAACAAGGCACAGGAACATGAAATATATGATCTGAAACCCTTCTTCACCAGCTCTCATTTTTCAAATGCAAATTTTGTGGTGGATGAAGAGCATGGAGTAATCAGGCATCACCTTGCCAGATGA | 2838 | 43.41 | MAGETPDGSNSGIPPSTPDSPTTSANFETDQLPHLSHTSDNYPDEDEAAVDPRIVQDEPDLEEEEEGEDLYHDNFLDDYRRMDDHDQYESLGLDDSLEDERDLDQIMEDRRAAEMELETRDAQFTRRKLPELLHDHDSEDENYRPSKRSRADFRPPAAARSYDDIDGMQSSPGRSQRENSRDDVPMTDHSVDDQYEDEDDDENENEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDIAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVDSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYVTKKQDLFSAYKLTQEDKEEIEKLSKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVTDELLAMFVVDSHFKSQPKGGNLDDKSINESQEDSQDTTRPVDPEVLPQDLLKKYITYAKLNVFPRLHDADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLHLLRELVKNALHFEEIVRGSTSELAHINVKLEDLQNKAQEHEIYDLKPFFTSSHFSNANFVVDEEHGVIRHHLAR | 945 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 46726658 | 46732691 | - | Sed0006329.1 | Sed02g0928 | 704596 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed02g0928 | 945 | Gene3D | - | 221 | 325 | - | - | |
| Sed02g0928 | 945 | CDD | MCM2 | 511 | 838 | - | - | |
| Sed02g0928 | 945 | SMART | mcm | 325 | 840 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed02g0928 | 945 | MobiDBLite | consensus disorder prediction | 723 | 749 | - | - | |
| Sed02g0928 | 945 | FunFam | DNA helicase | 221 | 325 | - | - | |
| Sed02g0928 | 945 | SUPERFAMILY | Nucleic acid-binding proteins | 230 | 477 | IPR012340 | - | |
| Sed02g0928 | 945 | Coils | Coil | 894 | 914 | - | - | |
| Sed02g0928 | 945 | FunFam | DNA helicase | 356 | 406 | - | - | |
| Sed02g0928 | 945 | MobiDBLite | consensus disorder prediction | 39 | 56 | - | - | |
| Sed02g0928 | 945 | Pfam | Mini-chromosome maintenance protein 2 | 45 | 168 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Sed02g0928 | 945 | MobiDBLite | consensus disorder prediction | 116 | 210 | - | - | |
| Sed02g0928 | 945 | FunFam | DNA helicase | 488 | 862 | - | - | |
| Sed02g0928 | 945 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 220 | 905 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)|GO:1902975(PANTHER) | |
| Sed02g0928 | 945 | ProSiteProfiles | MCM family domain profile. | 508 | 714 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed02g0928 | 945 | MobiDBLite | consensus disorder prediction | 9 | 38 | - | - | |
| Sed02g0928 | 945 | Gene3D | - | 356 | 406 | - | - | |
| Sed02g0928 | 945 | MobiDBLite | consensus disorder prediction | 731 | 745 | - | - | |
| Sed02g0928 | 945 | MobiDBLite | consensus disorder prediction | 57 | 72 | - | - | |
| Sed02g0928 | 945 | ProSitePatterns | MCM family signature. | 617 | 625 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Sed02g0928 | 945 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 518 | 842 | IPR027417 | - | |
| Sed02g0928 | 945 | Pfam | MCM P-loop domain | 496 | 718 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed02g0928 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 457 | 468 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Sed02g0928 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 396 | 410 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Sed02g0928 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 338 | 355 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Sed02g0928 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 361 | 373 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Sed02g0928 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 472 | 483 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Sed02g0928 | 945 | MobiDBLite | consensus disorder prediction | 116 | 159 | - | - | |
| Sed02g0928 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 549 | 564 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed02g0928 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 609 | 623 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed02g0928 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 637 | 650 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed02g0928 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 661 | 673 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed02g0928 | 945 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 688 | 696 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Sed02g0928 | 945 | MobiDBLite | consensus disorder prediction | 176 | 191 | - | - | |
| Sed02g0928 | 945 | Pfam | MCM AAA-lid domain | 755 | 839 | IPR041562 | - | |
| Sed02g0928 | 945 | Pfam | MCM N-terminal domain | 229 | 322 | IPR027925 | - | |
| Sed02g0928 | 945 | Pfam | MCM OB domain | 328 | 455 | IPR033762 | - | |
| Sed02g0928 | 945 | Gene3D | - | 329 | 454 | IPR012340 | - | |
| Sed02g0928 | 945 | Gene3D | - | 488 | 862 | IPR027417 | - | |
| Sed02g0928 | 945 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g0928 | Sed-Chr2:46726658 | Sed04g3910 | Sed-Chr4:47255122 | 1.10E-92 | dispersed | |
| Sed02g0928 | Sed-Chr2:46726658 | Sed02g0929 | Sed-Chr2:46726658 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed02g0928 | K02540 | - | csv:101219546 | 1740.7 |