Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0957 ATGGTGGGGGAGTTTACTCCCAAGCTAGAGCTCAAGCTCAAGCTCAAGCTTCAGCTTCTTCCTCCAATGAAGCTTTTCATTCTACTTCTCGCCATCCACTCCGCCCTAGCTGAGATCATCTTCGAGGAGCGATTCGAAGATGGATGGAAGAGTCGTTGGGTCTTATCTGACTGGAAAAGAAGTGAAGGAAAAGCTGGGACGTTTAAGTATACAGCCGGAAAGTATTCTGGAGATCCAGATGATAAAGGTATTCAAACTTACAATGATGCTAAGCACTTTGCCATATCTGCAAAGGTACCAGAGTTCACCAATGAGAACAGAACACTAGTGGTTCAGTATTCTATCAAATTTGAACAGGATATTGAATGTGGTGGAGGTTACATCAAGCTTCATTCTGGTTATGTCAATCAGAAGAAATATGGTGGTGATACTCCTTACAGTATGATGTTTGGACCAGATTTATGTGGTTCACAGACAAAAAAGCTCCACGTGATACTTTCTTACCAAGGACAGAATTATCCCATTAAGAAGGATTTGGAATGCGAAACAGACAAATTAACTCATTTCTACACATTCATTCTTAGGCCGGATGCTAGTTACAGTATCCTTGTTGATAATCGAGAACGGGATTCTGGAAGCATGTACAGTGATTGGGACATCCTTCCACCTAGGAAAATCAAAGATGTTAAGGCAGAAAAGCCTGCTGACTGGGATGATAAAGAATACATTGAAGACCCTAATGATGTTAAACCGGAGGGATACGATTCAATTCCCGCTGAGATCCCTGATCCGAAGGCAAAAGAGCCTGATACTTGGGATGAGGATGAGGATGGCATATGGAGGGCACCCAAGGTTGCAAATCCAGCATACAAGGGACCATGGAAGCGTAAGAAAATTAAAAACCCCAATTACAAGGGAAAGTGGAGGACTCCATGGATTAATAATCCAGAGTTTGAAGACGATCCTAATCTCTACGTGCTAAAACCAATTAAGTATGTGGGCATTGAAGTTTGGCAGGTAAAAGCTGGATCAGTTTTTGACAACATCTTGATTTGCGATGATCCACAGTACGCTAAGGAGATTGTTGCTGATACGTTTGCAAGGAATAAGGAAGCTGAAAAGGAGGCTTTTGAGGAAGCAGAGAAAGAAAGGAAAGCTAGGGAAGAAAAGGAGGCTGAAAGGGCTCGAGAGGAAGGTGAAAAGAGAAGAAGGGAACGAGACCATCGTCATAGAGATAGAAGGAGGAATTATCGAAGGGATCGCCATAACTACGATGACTACCATGATGAGCTATGA 1296 42.67 MVGEFTPKLELKLKLKLQLLPPMKLFILLLAIHSALAEIIFEERFEDGWKSRWVLSDWKRSEGKAGTFKYTAGKYSGDPDDKGIQTYNDAKHFAISAKVPEFTNENRTLVVQYSIKFEQDIECGGGYIKLHSGYVNQKKYGGDTPYSMMFGPDLCGSQTKKLHVILSYQGQNYPIKKDLECETDKLTHFYTFILRPDASYSILVDNRERDSGSMYSDWDILPPRKIKDVKAEKPADWDDKEYIEDPNDVKPEGYDSIPAEIPDPKAKEPDTWDEDEDGIWRAPKVANPAYKGPWKRKKIKNPNYKGKWRTPWINNPEFEDDPNLYVLKPIKYVGIEVWQVKAGSVFDNILICDDPQYAKEIVADTFARNKEAEKEAFEEAEKERKAREEKEAERAREEGEKRRRERDHRHRDRRRNYRRDRHNYDDYHDEL 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47101711 47108235 + Sed0001495.1 Sed02g0957 704625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0957 431 MobiDBLite consensus disorder prediction 372 405 - -
Sed02g0957 431 MobiDBLite consensus disorder prediction 241 275 - -
Sed02g0957 431 Coils Coil 363 407 - -
Sed02g0957 431 Pfam Calreticulin family 278 351 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Sed02g0957 431 Pfam Calreticulin family 41 277 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Sed02g0957 431 PANTHER CALRETICULIN AND CALNEXIN 25 401 IPR001580 GO:0005509(PANTHER)|GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0006457(InterPro)|GO:0006457(PANTHER)|GO:0030433(PANTHER)|GO:0051082(InterPro)
Sed02g0957 431 Gene3D Calreticulin/calnexin, P domain 223 324 IPR009033 GO:0005509(InterPro)|GO:0005515(InterPro)
Sed02g0957 431 Gene3D - 38 394 - -
Sed02g0957 431 MobiDBLite consensus disorder prediction 261 275 - -
Sed02g0957 431 SUPERFAMILY P-domain of calnexin/calreticulin 219 334 IPR009033 GO:0005509(InterPro)|GO:0005515(InterPro)
Sed02g0957 431 MobiDBLite consensus disorder prediction 372 431 - -
Sed02g0957 431 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 236 IPR013320 -
Sed02g0957 431 FunFam Calreticulin 1b 38 223 - -
Sed02g0957 431 ProSitePatterns Calreticulin family signature 2. 148 156 IPR018124 GO:0005509(InterPro)
Sed02g0957 431 PRINTS Calreticulin signature 261 283 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Sed02g0957 431 PRINTS Calreticulin signature 299 318 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Sed02g0957 431 PRINTS Calreticulin signature 332 352 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Sed02g0957 431 PRINTS Calreticulin signature 118 136 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Sed02g0957 431 PRINTS Calreticulin signature 233 246 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Sed02g0957 431 PRINTS Calreticulin signature 144 160 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Sed02g0957 431 PIRSF Calreticulin 19 430 IPR009169 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Sed02g0957 431 FunFam Calreticulin 223 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0957 K08057 - - csv:101203114 688.723
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0957 Sed-Chr2:47101711 Sed11g0406 Sed-Chr11:3902601 3.60E-107 dispersed
Sed12g0530 Sed-Chr12:3227738 Sed02g0957 Sed-Chr2:47101711 5.30E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1236 . . . . . Bpe14g01055 . . . . Cma06g01737 . . . Sed02g0957 . . Bhi01g03729 Tan10g1382 Cmetu07g1340 . Hepe05g1091 . Lcy11g0995 . . . . . . . . . . . . . . Cme07g01976 . Blo07g00110 Bda11g00474 . . . . Bma06g01436 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008608 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 1 2 1 2 35