Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0966 ATGGCGAACCCCTTTTTGTTCAAGGAGGAGGGGATGGGGTATTGGGGGCCTTTGAGAGCTCAGGCTGAAGCTATGACTTCTACTGATGCTGGAATGAGGAGTTTGAGTCCTGAAGATGGGATTCACAGCTTCTCGGAGCTGATGAATTTCGATTCTTATGCGGGGTGGGGCAACAATTGCGCCACCATTGATCATATTTTCTCGTCTTGTGGCCTTTCGTCGATGCCACCGATGAGTACTTGCGGTTCTATGGAGGGCTTGACTTATCCTGATGGGGGGAACCATGGAGGATTCCCTTTGAATGAACATGGTGGTGGTGCTATTTCCATGGCGAATTCTTTCACTTGTGGGGACAAGGTGATGTTTCAGCAGCCAGACACTGGATTTGGGGAATCCGATGTTTTGGATGGCACAAACAAAACAGGTTCAAAATCAAATGATGTCCCTCTAGACATGGATAGCTGTCTGATCTCTCGGCCGCTTGGTTGTTCACTCGACGAGAGAATGCTGAGGGCATTGTCTTTGTTTAAAGAGTCTTCGCCCGGTGGTATTTTAGCTCAAGTCTGGGTTCCTGTGAGGCATGGAGACCAATTCTTCTTGAGTACCAGTGAGCAGCCATATTTGCTTGACCAAATGCTCACAGGGTACCGTGAAGTGTCAAGGTCATTTATTTTCTCAGCAGAAGGAAAATTGGGTTCTCTCCTTGGGCTTCCTGGTCGTGTTTTCACGTCCAAACTTCCAGAATGGACATCAAATGTTAGATATTACGGCGAGCATGAGTATCTGAGAATGGAACATGCTATCGGTCATGAAGTTTGTGGATCGATTGCGTTGCCTGTATTCAATAATGAACTTGAGAAGTCATGCTGTGCTGTACTTGAAGTTGTTACTAAAAAAGAAAAACTCAATTTTGATGCAGAGATCGATATTGTTTCCCAAGCTTTAGAGACTGTTAGCTTGAGCACTGTTGCACCTCCTCGACTATATTCTCAGTGCTTAAAGAAGAACCAGAGAGCTGCATTGGCAGAGATAATGGATGTGCTACGTGCTGTATGTCATGCACATAGGCTACCGCTGGCACTAACCTGGATTCCTTGTTGTTATTCCTTGGATGTTGTCGATGAGGTTGCAAGAGTTCGTGTTAAGGAGGATACCATTAGCGCAAATGAGAAATTTGTATTATGTATTGAGGAAACAGCGTGTTATGTGAATGACAAATCAACTCAAGGATTTGTTCATGCGTGTTTGGAGCATCATCTTGAAGAAGGGCAAGGGATAGCCGGGAAAGCTCTTCAATCTAATCATCCTTTCTTTTATCCCGATGTCAAGGCATACGATATTAATAAATATCCGTTGGTCCATCATGCACGCAAGTTCTGTTTGAATGCTGCAGTTGCAATCAGGCTGAGAAGCATGTACACTGGCGACGATGATTATATACTAGAATTCTTTCTACCCATCAATATGAAAGGAAGCTCAGAACAGCAACTTTTGCTAAACAGTCTATCTCTTACCATGCAAAGAATGTGCAGGACTTTGAGGACAGTTTCAAAGGAAGAATTAATAGGGATCAAGGATCTGGTTTCTGGATTTCAAAGTGGGTTAGTAGGGAATTCTGCAACGACATCAAGGATAGACTCGCACTCCACCGTAACAGACAGTGAAACAAGGGTATGTAACTCAATAAATGATGGAGCTGAAACAGAATGCCCTAAGAAGCAGATGCCTAATGGATCACGGAAGCAGGGGGAGAAAAAACGTAGCGCATCTGAAAGAAACGTGAGCTTGAGTGTCCTACAACAACATTTTTCTGGGAGTCTCAAGGATGCAGCAAAGAGCATTGGTGTTTGTCCAACAACGCTGAAAAGAATATGCAGACAGCATGGGATTTTGAGGTGGCCATCTCGTAAAATAAACAAGGTAAACCGTTCGTTAAGGAAAATACAAACAGTTATCGATTCCGTCAAGGGAATGGAGGGTGGACTGAAGTTTGACCCAAATAGAGGAGGGGGTCTTATGGCCAGCTCTCTTATTCATGAACTCAATGGACAAAACAATCTACTTTTCTCTGATAGTAACCCATCTATAAGAAACTTTGAGCCGTTCCTTCATGATGCTAATCCGGTCCATCCTCTCCCGTTTGGTACTCAAAGTTCTGCCATGAAATTGGAAATGAACGAGTCTTTCGTTGCTATGCCCCAGAGAATTTCTTCGAGGAGTGTTCTCATTCCGGGAAAGGAACCCGACATTTGCCAGGTTGATTGTAGTGATGGTTCGAAGTCCACTGGGGTAGATGTTGAGTCATGTCAGCTTGCTGACCTGGATATGATGAGTTGGGATGCCCTAAAGAATGGCTCGGCTTCTATTATTGCTAAAAAAAGTAACAAATTGGATTTTGTTGGGAATGATTTAAGATCAGGCGATGCTGCTGGCCAATTTATGGCCAAGAGCTCAAGCTCTTTTGTTGCAGCTGCTGATGAAGTTGGTACCGGTACTGGTACCGTGTTGCTAGGGGATGATGGAATGAATCAACATTACCAACCAACTGCTTCAACCACGACAGACTCGTCGAATGGCTCTGGCTTATTGATCCATGGAAGTTCATCCAGCTCTCAGACCGTTGAGAAAAAGCACGTGCAAGAAAAAGTTGGCTCTGTTGACAGTGATTCCAAGATTGTTGTAAAAGCCTCGTACAAAGAAGACATAGTTCGATTCAAGTTTGATCCTTCCTTAGGATATCTCCAACTCTACGAAGAAGTTGGCAAGAGATTCAAACTATGCCAAGGGACGTTTCAGCTGAAGTACCTAGACGACGAAAACGAATGGGTACTGCTAGTAAGCAATTCAGACTTGCAGGAATGTCTCGAAGTGATGGATGAAATCGACAGCAGAAACGTGAAGTTTCTCGTCCGTGATATCGTGTGTGCAGTCGGGAGTTCTGGCAGCAGCACATGCTTCCCATCAGGAAGTTCATAA 2976 44.29 MANPFLFKEEGMGYWGPLRAQAEAMTSTDAGMRSLSPEDGIHSFSELMNFDSYAGWGNNCATIDHIFSSCGLSSMPPMSTCGSMEGLTYPDGGNHGGFPLNEHGGGAISMANSFTCGDKVMFQQPDTGFGESDVLDGTNKTGSKSNDVPLDMDSCLISRPLGCSLDERMLRALSLFKESSPGGILAQVWVPVRHGDQFFLSTSEQPYLLDQMLTGYREVSRSFIFSAEGKLGSLLGLPGRVFTSKLPEWTSNVRYYGEHEYLRMEHAIGHEVCGSIALPVFNNELEKSCCAVLEVVTKKEKLNFDAEIDIVSQALETVSLSTVAPPRLYSQCLKKNQRAALAEIMDVLRAVCHAHRLPLALTWIPCCYSLDVVDEVARVRVKEDTISANEKFVLCIEETACYVNDKSTQGFVHACLEHHLEEGQGIAGKALQSNHPFFYPDVKAYDINKYPLVHHARKFCLNAAVAIRLRSMYTGDDDYILEFFLPINMKGSSEQQLLLNSLSLTMQRMCRTLRTVSKEELIGIKDLVSGFQSGLVGNSATTSRIDSHSTVTDSETRVCNSINDGAETECPKKQMPNGSRKQGEKKRSASERNVSLSVLQQHFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKVNRSLRKIQTVIDSVKGMEGGLKFDPNRGGGLMASSLIHELNGQNNLLFSDSNPSIRNFEPFLHDANPVHPLPFGTQSSAMKLEMNESFVAMPQRISSRSVLIPGKEPDICQVDCSDGSKSTGVDVESCQLADLDMMSWDALKNGSASIIAKKSNKLDFVGNDLRSGDAAGQFMAKSSSSFVAAADEVGTGTGTVLLGDDGMNQHYQPTASTTTDSSNGSGLLIHGSSSSSQTVEKKHVQEKVGSVDSDSKIVVKASYKEDIVRFKFDPSLGYLQLYEEVGKRFKLCQGTFQLKYLDDENEWVLLVSNSDLQECLEVMDEIDSRNVKFLVRDIVCAVGSSGSSTCFPSGSS 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47190067 47197837 + Sed0012019.2 Sed02g0966 704634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0966 991 Pfam RWP-RK domain 594 640 IPR003035 -
Sed02g0966 991 Gene3D - 888 974 - -
Sed02g0966 991 Pfam NLP protein GAF domain 331 514 IPR055081 -
Sed02g0966 991 MobiDBLite consensus disorder prediction 845 874 - -
Sed02g0966 991 SMART PB1_new 891 973 IPR000270 GO:0005515(InterPro)
Sed02g0966 991 MobiDBLite consensus disorder prediction 845 880 - -
Sed02g0966 991 Pfam PB1 domain 892 971 IPR000270 GO:0005515(InterPro)
Sed02g0966 991 PANTHER PROTEIN NLP8 158 983 IPR045012 GO:0003700(InterPro)
Sed02g0966 991 ProSiteProfiles RWP-RK domain profile. 580 661 IPR003035 -
Sed02g0966 991 ProSiteProfiles PB1 domain profile. 891 973 IPR053793 -
Sed02g0966 991 MobiDBLite consensus disorder prediction 563 593 - -
Sed02g0966 991 SUPERFAMILY CAD & PB1 domains 886 975 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0966 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0966 Sed-Chr2:47190067 Sed12g0539 Sed-Chr12:3305437 0.00E+00 dispersed
Sed02g0965 Sed-Chr2:47190067 Sed02g0966 Sed-Chr2:47190067 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1280 . . . . . Bpe14g01069 . . . . Cma06g01701 Cma14g01419 . Car14g01252 Sed02g0966 . Cpe03g01194 Bhi01g03703 Tan10g1398 Cmetu07g0313 . Hepe05g1115 . Lcy11g1016 . . . . . . . . . . Cone11ag0645 . . . Cme07g01966 Blo02g00452 Blo07g00121 Bda11g00482 Bda13g00247 . . Bma02g00962 Bma06g01446 . . Cmo14g01455 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006292 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37582 PF00564 PB1 3.20E-18 CL0072 Sed TF