Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0988 ATGATTGCGAGCTCTCTTTGCAATGCTTCCGCCAAATTCCCGGCAGAAGTGATGGAGGTAGAAACAATGATGGAACAGAAAAGGAACCTATGCTCTGTTGATGAGAGCAGTCTCACTTCTCTTACATCCAAGAGACACAAGACTGATTTCTCTCATTCCTCTAAGGAAAGGAAAGACAAACTAGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCGCCATATGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCGATGGAATATATTCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTCAGTTGCAGGATCCGGAGCTGCACAACCACAGCCTGAGAAACAGAGGTTTATGTCTGGTTCCAATCTCATGTACTGCTGGGGTTGCACGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAACTTCCCCCAAATTCGAGAAGACCATGTCTCCATTTCATTGA 504 46.03 MIASSLCNASAKFPAEVMEVETMMEQKRNLCSVDESSLTSLTSKRHKTDFSHSSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQDPELHNHSLRNRGLCLVPISCTAGVARSNGADIWAPVKTTSPKFEKTMSPFH 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47344280 47349449 + Sed0023886.1 Sed02g0988 704656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0988 167 Gene3D - 42 114 IPR036638 GO:0046983(InterPro)
Sed02g0988 167 CDD bHLH_AtbHLH_like 53 102 IPR045239 -
Sed02g0988 167 SMART finulus 53 100 IPR011598 GO:0046983(InterPro)
Sed02g0988 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 109 IPR036638 GO:0046983(InterPro)
Sed02g0988 167 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 44 138 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed02g0988 167 FunFam Transcription factor bHLH113 family 44 120 - -
Sed02g0988 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0988 Sed-Chr2:47344280 Sed02g0991 Sed-Chr2:47344280 3.40E-82 dispersed
Sed02g0988 Sed-Chr2:47344280 Sed02g0989 Sed-Chr2:47344280 3.40E-82 tandem
Sed12g0574 Sed-Chr12:3476681 Sed02g0988 Sed-Chr2:47344280 1.50E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0988 - - - 0.0